Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05970

Experiment: Carbon source Phenylacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS05965 and HSERO_RS05970 are separated by 15 nucleotidesHSERO_RS05970 and HSERO_RS05975 are separated by 15 nucleotidesHSERO_RS05975 and HSERO_RS05980 are separated by 132 nucleotides HSERO_RS05965: HSERO_RS05965 - ABC transporter ATP-binding protein, at 1,353,110 to 1,354,324 _RS05965 HSERO_RS05970: HSERO_RS05970 - ABC transporter, at 1,354,340 to 1,355,107 _RS05970 HSERO_RS05975: HSERO_RS05975 - amino acid ABC transporter ATPase, at 1,355,123 to 1,355,848 _RS05975 HSERO_RS05980: HSERO_RS05980 - aldehyde dehydrogenase, at 1,355,981 to 1,356,445 _RS05980 Position (kb) 1354 1355 1356Strain fitness (log2 ratio) -1 0 1at 1354.491 kb on + strand, within HSERO_RS05970at 1355.102 kb on + strandat 1355.114 kb on + strandat 1355.851 kb on - strandat 1355.859 kb on - strandat 1356.018 kb on + strandat 1356.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM
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1,354,491 + HSERO_RS05970 0.20 +0.7
1,355,102 + -0.1
1,355,114 + +0.2
1,355,851 - -0.6
1,355,859 - -0.2
1,356,018 + -0.7
1,356,025 - +0.8

Or see this region's nucleotide sequence