Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05900

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,341,077	-		HSERO_RS05895	0.31	-0.5
1,341,179	+		HSERO_RS05895	0.39	-0.1
1,341,213	-		HSERO_RS05895	0.42	-0.6
1,341,417	-		HSERO_RS05895	0.59	+1.6
1,341,496	-		HSERO_RS05895	0.66	-0.0
1,341,556	-		HSERO_RS05895	0.71	+1.4
1,341,582	+		HSERO_RS05895	0.73	-0.8
1,341,583	+		HSERO_RS05895	0.73	-0.7
1,341,583	+		HSERO_RS05895	0.73	+1.2
1,341,597	-		HSERO_RS05895	0.74	-0.2
1,341,744	-		HSERO_RS05895	0.86	+0.3
1,341,749	-		HSERO_RS05895	0.87	-0.8
1,341,783	-		HSERO_RS05895	0.90	-0.6
1,341,804	+				-0.1
1,341,891	+				+0.3
1,341,918	+				-0.4
1,342,113	+		HSERO_RS05900	0.23	+0.1
1,342,143	+		HSERO_RS05900	0.31	+0.2
1,342,176	+		HSERO_RS05900	0.39	+0.8
1,342,184	-		HSERO_RS05900	0.41	+0.6
1,342,464	+				-0.5
1,342,464	+				-1.0
1,342,477	-				+0.5
1,342,511	-				+0.1
1,342,516	-				+0.5
1,342,563	+				+0.3
1,342,576	-				-0.1
1,343,166	+		HSERO_RS05910	0.23	+0.3
1,343,286	+		HSERO_RS05910	0.41	-1.3