Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05760

Experiment: Carbon source Phenylacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS05750 and HSERO_RS05755 overlap by 22 nucleotidesHSERO_RS05755 and HSERO_RS05760 overlap by 4 nucleotidesHSERO_RS05760 and HSERO_RS05765 are separated by 220 nucleotides HSERO_RS05750: HSERO_RS05750 - hypothetical protein, at 1,309,162 to 1,309,893 _RS05750 HSERO_RS05755: HSERO_RS05755 - 2-dehydropantoate 2-reductase, at 1,309,872 to 1,310,828 _RS05755 HSERO_RS05760: HSERO_RS05760 - MFS transporter, at 1,310,825 to 1,312,207 _RS05760 HSERO_RS05765: HSERO_RS05765 - salicylaldehyde dehydrogenase, at 1,312,428 to 1,313,879 _RS05765 Position (kb) 1310 1311 1312 1313Strain fitness (log2 ratio) -1 0 1at 1309.895 kb on - strandat 1309.966 kb on - strandat 1310.311 kb on + strand, within HSERO_RS05755at 1310.367 kb on + strand, within HSERO_RS05755at 1310.397 kb on - strand, within HSERO_RS05755at 1310.412 kb on + strand, within HSERO_RS05755at 1310.483 kb on + strand, within HSERO_RS05755at 1310.506 kb on + strand, within HSERO_RS05755at 1310.509 kb on - strand, within HSERO_RS05755at 1310.514 kb on - strand, within HSERO_RS05755at 1310.579 kb on - strand, within HSERO_RS05755at 1310.699 kb on + strand, within HSERO_RS05755at 1310.707 kb on - strand, within HSERO_RS05755at 1310.878 kb on + strandat 1310.884 kb on - strandat 1310.968 kb on - strand, within HSERO_RS05760at 1310.998 kb on + strand, within HSERO_RS05760at 1311.020 kb on + strand, within HSERO_RS05760at 1311.060 kb on + strand, within HSERO_RS05760at 1311.087 kb on - strand, within HSERO_RS05760at 1311.095 kb on - strand, within HSERO_RS05760at 1311.097 kb on + strand, within HSERO_RS05760at 1311.182 kb on - strand, within HSERO_RS05760at 1311.263 kb on - strand, within HSERO_RS05760at 1311.295 kb on - strand, within HSERO_RS05760at 1311.323 kb on + strand, within HSERO_RS05760at 1311.659 kb on + strand, within HSERO_RS05760at 1311.714 kb on - strand, within HSERO_RS05760at 1311.721 kb on - strand, within HSERO_RS05760at 1311.826 kb on - strand, within HSERO_RS05760at 1311.836 kb on - strand, within HSERO_RS05760at 1311.907 kb on - strand, within HSERO_RS05760at 1312.189 kb on - strandat 1312.260 kb on + strandat 1312.333 kb on + strandat 1312.360 kb on - strandat 1312.450 kb on - strandat 1312.556 kb on - strandat 1312.572 kb on + strandat 1312.776 kb on - strand, within HSERO_RS05765at 1312.840 kb on + strand, within HSERO_RS05765at 1312.877 kb on + strand, within HSERO_RS05765at 1312.913 kb on - strand, within HSERO_RS05765at 1313.036 kb on - strandat 1313.116 kb on + strand, within HSERO_RS05765

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM
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1,309,895 - +0.1
1,309,966 - -0.1
1,310,311 + HSERO_RS05755 0.46 -0.1
1,310,367 + HSERO_RS05755 0.52 +0.5
1,310,397 - HSERO_RS05755 0.55 +0.3
1,310,412 + HSERO_RS05755 0.56 -0.5
1,310,483 + HSERO_RS05755 0.64 -0.6
1,310,506 + HSERO_RS05755 0.66 +0.5
1,310,509 - HSERO_RS05755 0.67 -0.3
1,310,514 - HSERO_RS05755 0.67 +0.2
1,310,579 - HSERO_RS05755 0.74 -0.3
1,310,699 + HSERO_RS05755 0.86 +0.1
1,310,707 - HSERO_RS05755 0.87 +0.2
1,310,878 + -0.2
1,310,884 - -1.4
1,310,968 - HSERO_RS05760 0.10 -1.0
1,310,998 + HSERO_RS05760 0.13 -0.5
1,311,020 + HSERO_RS05760 0.14 -0.8
1,311,060 + HSERO_RS05760 0.17 -0.1
1,311,087 - HSERO_RS05760 0.19 +0.2
1,311,095 - HSERO_RS05760 0.20 +0.6
1,311,097 + HSERO_RS05760 0.20 -0.2
1,311,182 - HSERO_RS05760 0.26 +0.8
1,311,263 - HSERO_RS05760 0.32 -0.2
1,311,295 - HSERO_RS05760 0.34 -0.1
1,311,323 + HSERO_RS05760 0.36 +0.3
1,311,659 + HSERO_RS05760 0.60 +0.6
1,311,714 - HSERO_RS05760 0.64 +0.8
1,311,721 - HSERO_RS05760 0.65 -0.8
1,311,826 - HSERO_RS05760 0.72 +0.1
1,311,836 - HSERO_RS05760 0.73 -0.0
1,311,907 - HSERO_RS05760 0.78 +0.4
1,312,189 - +0.3
1,312,260 + +0.3
1,312,333 + -0.7
1,312,360 - +0.4
1,312,450 - -0.4
1,312,556 - +0.4
1,312,572 + +0.2
1,312,776 - HSERO_RS05765 0.24 -1.5
1,312,840 + HSERO_RS05765 0.28 +1.5
1,312,877 + HSERO_RS05765 0.31 +0.1
1,312,913 - HSERO_RS05765 0.33 -0.2
1,313,036 - +0.6
1,313,116 + HSERO_RS05765 0.47 -0.0

Or see this region's nucleotide sequence