Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05325

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,176,502	+		HSERO_RS05320	0.50	+0.1
1,176,626	-		HSERO_RS05320	0.59	-0.1
1,176,929	-		HSERO_RS05320	0.79	-0.1
1,176,979	-		HSERO_RS05320	0.82	-0.0
1,176,999	-		HSERO_RS05320	0.83	-0.2
1,177,077	+		HSERO_RS05320	0.89	+0.6
1,177,085	-		HSERO_RS05320	0.89	-0.8
1,177,309	+				-0.5
1,177,450	+		HSERO_RS05325	0.21	+1.6
1,177,699	-		HSERO_RS05325	0.47	-0.4
1,178,329	+				-0.1
1,178,451	-		HSERO_RS05330	0.24	+0.9
1,178,724	-		HSERO_RS05330	0.61	-0.1
1,178,756	+		HSERO_RS05330	0.65	+0.1
1,178,992	-				-0.1
1,179,092	+				-0.3