Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS05235 and HSERO_RS05240 are separated by 47 nucleotides HSERO_RS05240 and HSERO_RS05245 are separated by 7 nucleotides HSERO_RS05245 and HSERO_RS05250 are separated by 158 nucleotides
HSERO_RS05235: HSERO_RS05235 - L-fuconate dehydratase (EC 4.2.1.68) <small>(from data)</small>, at 1,159,430 to 1,160,707
_RS05235
HSERO_RS05240: HSERO_RS05240 - short-chain dehydrogenase, at 1,160,755 to 1,161,531
_RS05240
HSERO_RS05245: HSERO_RS05245 - hypothetical protein, at 1,161,539 to 1,161,901
_RS05245
HSERO_RS05250: HSERO_RS05250 - ABC transporter for L-fucose, ATPase component <small>(from data)</small>, at 1,162,060 to 1,163,622
_RS05250
Position (kb) 1160
1161
1162 Strain fitness (log2 ratio) -1
0
1
2 at 1159.819 kb on + strand, within HSERO_RS05235 at 1160.060 kb on - strand, within HSERO_RS05235 at 1160.088 kb on - strand, within HSERO_RS05235 at 1160.187 kb on - strand, within HSERO_RS05235 at 1160.233 kb on + strand, within HSERO_RS05235 at 1160.382 kb on + strand, within HSERO_RS05235 at 1160.390 kb on - strand, within HSERO_RS05235 at 1160.615 kb on + strand at 1160.825 kb on + strand at 1160.901 kb on + strand, within HSERO_RS05240 at 1160.963 kb on + strand, within HSERO_RS05240 at 1161.115 kb on + strand, within HSERO_RS05240 at 1161.234 kb on + strand, within HSERO_RS05240 at 1161.245 kb on + strand, within HSERO_RS05240 at 1161.411 kb on - strand, within HSERO_RS05240 at 1161.719 kb on + strand, within HSERO_RS05245 at 1161.782 kb on + strand, within HSERO_RS05245 at 1161.850 kb on - strand, within HSERO_RS05245 at 1161.976 kb on + strand at 1162.054 kb on - strand at 1162.445 kb on - strand, within HSERO_RS05250
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 1,159,819 + HSERO_RS05235 0.30 +0.2 1,160,060 - HSERO_RS05235 0.49 +0.4 1,160,088 - HSERO_RS05235 0.51 +1.1 1,160,187 - HSERO_RS05235 0.59 +0.1 1,160,233 + HSERO_RS05235 0.63 +2.1 1,160,382 + HSERO_RS05235 0.74 -0.4 1,160,390 - HSERO_RS05235 0.75 +0.3 1,160,615 + +0.6 1,160,825 + +0.3 1,160,901 + HSERO_RS05240 0.19 +0.1 1,160,963 + HSERO_RS05240 0.27 -0.3 1,161,115 + HSERO_RS05240 0.46 +0.2 1,161,234 + HSERO_RS05240 0.62 +1.5 1,161,245 + HSERO_RS05240 0.63 +0.3 1,161,411 - HSERO_RS05240 0.84 +0.6 1,161,719 + HSERO_RS05245 0.50 -0.4 1,161,782 + HSERO_RS05245 0.67 -0.4 1,161,850 - HSERO_RS05245 0.86 -0.1 1,161,976 + +0.9 1,162,054 - -0.1 1,162,445 - HSERO_RS05250 0.25 +0.3
Or see this region's nucleotide sequence