Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04995

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,100,520	-				-0.4
1,100,590	-				+0.5
1,100,623	-				-0.1
1,100,634	+				+0.7
1,100,634	+				-0.2
1,100,644	+				+0.2
1,100,654	-				-0.7
1,100,684	+				-0.0
1,100,691	-				-0.1
1,100,692	-				-0.5
1,100,699	+				+0.1
1,100,699	+				+0.5
1,100,699	+				-0.0
1,100,707	-				+0.4
1,100,735	+				+0.5
1,100,735	+				-0.6
1,100,743	-				-0.5
1,100,743	-				-0.4
1,100,745	+				-0.5
1,100,747	+				-0.2
1,100,753	-				+0.5
1,100,754	+				+0.4
1,100,754	+				+0.3
1,100,754	+				+0.6
1,100,762	-				+0.3
1,100,764	+				-0.2
1,100,772	-				+3.2
1,100,784	-				-0.0
1,100,788	+				-0.3
1,100,810	+				-0.1
1,100,811	+				+0.1
1,100,811	+				+0.4
1,100,811	+				+0.4
1,100,811	+				-0.8
1,100,811	+				-0.5
1,100,816	+				+0.3
1,100,816	+				-0.5
1,100,818	+				-0.4
1,100,824	-				+0.1
1,100,826	-				-1.5
1,100,826	-				-0.2
1,100,835	+				+0.6
1,100,835	+				-0.1
1,100,835	+				+0.0
1,100,843	-				-0.1
1,100,846	+				+0.3
1,100,846	+				-0.3
1,100,856	+				+0.4
1,100,863	+				+0.5
1,100,866	-				+0.9
1,100,866	-				-0.2
1,100,870	+				+0.1
1,100,871	-				-0.6
1,100,871	-				+0.2
1,100,871	-				+0.2
1,100,872	-				+0.1
1,100,879	-				-0.5
1,100,879	-				+0.5
1,100,881	-				+0.5
1,100,885	+				-0.3
1,100,885	+				+0.5
1,100,921	+				+0.5
1,100,921	+				+0.1
1,100,924	+				-0.3
1,100,924	+				+1.2
1,100,924	+				+0.6
1,100,924	+				-0.6
1,100,926	+				+0.8
1,100,926	+				-0.1
1,100,926	+				-0.0
1,100,926	+				+0.8
1,100,926	+				-0.4
1,100,926	+				+0.5
1,100,926	+				+0.4
1,100,926	+				-0.8
1,100,926	+				+1.6
1,100,929	-				+0.3
1,100,929	-				-0.5
1,100,929	-				+0.2
1,100,929	-				+0.2
1,100,932	-				+0.6
1,100,932	-				+0.6
1,100,934	-				-1.3
1,100,934	-				+0.2
1,100,934	-				-0.1
1,100,934	-				+1.7
1,100,934	-				+0.3
1,100,934	-				+0.0
1,100,934	-				+0.2
1,100,935	+				-0.2
1,100,940	+				-0.2
1,100,942	+				+0.8
1,100,942	+				+0.7
1,100,943	+				+1.4
1,100,943	+				-0.6
1,100,943	+				+0.0
1,100,943	+				+0.5
1,100,943	-				-0.2
1,100,943	-				+0.4
1,100,943	-				-0.2
1,100,947	-				+0.7
1,100,951	-				-0.2
1,100,951	-				+1.0
1,100,951	-				+0.2
1,100,961	+				-0.2
1,100,963	+				-0.3
1,100,963	+				-0.5
1,100,963	+				+0.6
1,100,969	-				-1.2
1,100,969	-				+0.5
1,100,969	-				-0.1
1,100,969	-				+0.4
1,100,971	+				+0.9
1,100,971	-				+0.5
1,100,971	-				+0.3
1,100,971	-				+0.3
1,100,971	-				+0.1
1,100,971	-				+0.1
1,100,973	+				+0.6
1,100,978	+				-0.3
1,100,979	-				+0.2
1,100,980	-				+0.1
1,100,981	-				+0.8
1,100,981	-				+0.1
1,100,997	+				-0.1
1,100,998	+				+0.5
1,100,999	+				+0.8
1,100,999	+				+1.3
1,100,999	+				+0.1
1,101,005	-				+0.1
1,101,005	-				+0.2
1,101,007	-				-0.5
1,101,031	-				+0.8
1,101,042	+				-0.6
1,101,045	+				+1.3
1,101,045	+				+0.1
1,101,048	-				+0.4
1,101,048	-				+0.2
1,101,051	-				-1.1
1,101,061	+				+0.1
1,101,099	+				-0.2
1,101,099	+				+1.1
1,101,104	+				-0.4
1,101,116	+				-0.0
1,101,116	+				+0.0
1,101,118	-				+0.3
1,101,123	-				-0.0
1,101,130	+				+0.1
1,101,146	-				-0.8
1,101,154	+				-0.9
1,101,154	+				+0.5
1,101,164	+				+1.0
1,101,188	-				+1.3
1,101,219	+				+1.6
1,101,226	+				+0.5
1,101,226	+				+0.6
1,101,230	+				+1.3
1,101,238	-				+0.5
1,101,239	-				+0.5
1,101,239	-				+0.9
1,101,242	+				+0.1
1,101,242	+				+0.3
1,101,244	+				+0.3
1,101,244	+				-0.5
1,101,244	+				-0.1
1,101,244	+				+0.3
1,101,244	+				+0.5
1,101,244	+				+0.7
1,101,244	+				+0.6
1,101,244	+				+0.1
1,101,244	+				-0.3
1,101,244	+				-0.2
1,101,244	+				-0.8
1,101,244	+				-0.4
1,101,244	+				-0.1
1,101,244	+				-0.1
1,101,244	+				+0.1
1,101,244	+				+0.6
1,101,244	+				-0.3
1,101,244	+				-0.5
1,101,244	+				+0.8
1,101,244	+				+0.5
1,101,244	+				+0.1
1,101,244	+				-1.2
1,101,244	+				-0.6
1,101,244	+				-0.6
1,101,244	+				+0.8
1,101,244	+				-0.4
1,101,244	+				+0.1
1,101,244	+				+0.5
1,101,244	+				+0.6
1,101,249	+				+0.0
1,101,252	-				-0.4
1,101,252	-				+1.7
1,101,252	-				+0.2
1,101,252	-				+0.8
1,101,252	-				+0.1
1,101,252	-				-0.9
1,101,252	-				+0.4
1,101,252	-				+0.1
1,101,252	-				-0.1
1,101,252	-				-0.0
1,101,252	-				+1.1
1,101,252	-				+0.3
1,101,252	-				+0.4
1,101,252	-				-0.2
1,101,252	-				-0.4
1,101,252	-				+0.5
1,101,252	-				-0.2
1,101,252	-				-0.1
1,101,252	-				+0.6
1,101,252	-				+0.0
1,101,252	-				+1.8
1,101,252	-				+0.4
1,101,252	-				+0.5
1,101,252	-				+1.8
1,101,252	-				+0.3
1,101,253	-				+0.2
1,101,253	-				+0.5
1,101,301	+				+0.3
1,101,301	+				+0.0
1,101,309	-				+0.7
1,101,309	-				-0.5
1,101,309	-				+0.3
1,101,318	-				+0.6
1,101,334	-				+0.1
1,101,340	+				+0.5
1,101,340	+				-0.1
1,101,347	+				+0.7
1,101,347	+				+0.1
1,101,350	-				+0.4
1,101,355	-				-0.3
1,101,355	-				-0.1
1,101,355	-				-0.4