Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04825

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,056,116	+		HSERO_RS04820	0.46	+1.3
1,056,228	-		HSERO_RS04820	0.53	-0.6
1,056,559	-		HSERO_RS04820	0.75	+0.2
1,056,638	-		HSERO_RS04820	0.81	-0.0
1,056,753	-		HSERO_RS04820	0.88	+0.6
1,056,873	+				-0.5
1,056,912	+				+0.2
1,056,920	-				-1.6
1,056,951	+				-0.8
1,056,959	-				-0.4
1,056,968	+				-0.5
1,057,030	+				+1.0
1,057,039	+				+0.5
1,057,091	-		HSERO_RS04825	0.14	-0.2
1,057,126	-		HSERO_RS04825	0.25	+1.2
1,057,268	+		HSERO_RS04825	0.71	+0.7
1,057,276	-		HSERO_RS04825	0.73	+0.6
1,057,359	-				+0.1
1,057,397	-				-1.4
1,057,443	+				+1.8
1,057,550	-		HSERO_RS04830	0.11	+0.1
1,057,606	-		HSERO_RS04830	0.16	-0.6
1,057,741	+		HSERO_RS04830	0.29	+0.9
1,057,776	+		HSERO_RS04830	0.33	+0.4
1,057,831	-		HSERO_RS04830	0.38	-0.4
1,057,891	+		HSERO_RS04830	0.44	+1.4
1,057,899	-		HSERO_RS04830	0.45	-0.0
1,058,067	+		HSERO_RS04830	0.61	+2.4
1,058,114	+		HSERO_RS04830	0.66	+0.3
1,058,127	-		HSERO_RS04830	0.67	-0.4
1,058,218	+		HSERO_RS04830	0.76	+0.1
1,058,333	-		HSERO_RS04830	0.87	-0.2