Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04515 and HSERO_RS04520 overlap by 47 nucleotides HSERO_RS04520 and HSERO_RS04525 overlap by 4 nucleotides HSERO_RS04525 and HSERO_RS04530 overlap by 4 nucleotides HSERO_RS04530 and HSERO_RS04535 are separated by 40 nucleotides HSERO_RS04535 and HSERO_RS04540 overlap by 1 nucleotides
HSERO_RS04515: HSERO_RS04515 - tail fiber protein, at 990,243 to 990,728
_RS04515
HSERO_RS04520: HSERO_RS04520 - lysozyme, at 990,682 to 991,251
_RS04520
HSERO_RS04525: HSERO_RS04525 - lysozyme, at 991,248 to 991,778
_RS04525
HSERO_RS04530: HSERO_RS04530 - hypothetical protein, at 991,775 to 992,149
_RS04530
HSERO_RS04535: HSERO_RS04535 - tail protein X, at 992,190 to 992,399
_RS04535
HSERO_RS04540: HSERO_RS04540 - head protein, at 992,399 to 992,890
_RS04540
Position (kb) 991
992 Strain fitness (log2 ratio) -1
0
1 at 990.287 kb on - strand at 990.405 kb on - strand, within HSERO_RS04515 at 990.438 kb on + strand, within HSERO_RS04515 at 990.438 kb on + strand, within HSERO_RS04515 at 990.446 kb on - strand, within HSERO_RS04515 at 990.577 kb on - strand, within HSERO_RS04515 at 990.659 kb on + strand, within HSERO_RS04515 at 990.666 kb on + strand, within HSERO_RS04515 at 991.069 kb on + strand, within HSERO_RS04520 at 991.156 kb on + strand, within HSERO_RS04520 at 991.156 kb on + strand, within HSERO_RS04520 at 991.292 kb on - strand at 991.408 kb on + strand, within HSERO_RS04525 at 991.425 kb on - strand, within HSERO_RS04525 at 991.812 kb on - strand at 991.897 kb on + strand, within HSERO_RS04530 at 991.923 kb on + strand, within HSERO_RS04530 at 992.052 kb on + strand, within HSERO_RS04530 at 992.099 kb on - strand, within HSERO_RS04530 at 992.201 kb on + strand at 992.296 kb on + strand, within HSERO_RS04535 at 992.314 kb on - strand, within HSERO_RS04535 at 992.492 kb on - strand, within HSERO_RS04540 at 992.516 kb on - strand, within HSERO_RS04540 at 992.576 kb on + strand, within HSERO_RS04540 at 992.576 kb on + strand, within HSERO_RS04540 at 992.611 kb on + strand, within HSERO_RS04540 at 992.652 kb on - strand, within HSERO_RS04540 at 992.765 kb on - strand, within HSERO_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 990,287 - +1.3 990,405 - HSERO_RS04515 0.33 +0.3 990,438 + HSERO_RS04515 0.40 -0.1 990,438 + HSERO_RS04515 0.40 +1.2 990,446 - HSERO_RS04515 0.42 +0.3 990,577 - HSERO_RS04515 0.69 +0.8 990,659 + HSERO_RS04515 0.86 -0.3 990,666 + HSERO_RS04515 0.87 -0.3 991,069 + HSERO_RS04520 0.68 +0.0 991,156 + HSERO_RS04520 0.83 +0.2 991,156 + HSERO_RS04520 0.83 -0.9 991,292 - +0.4 991,408 + HSERO_RS04525 0.30 +0.8 991,425 - HSERO_RS04525 0.33 +0.5 991,812 - -0.5 991,897 + HSERO_RS04530 0.33 -0.2 991,923 + HSERO_RS04530 0.39 -0.7 992,052 + HSERO_RS04530 0.74 -0.0 992,099 - HSERO_RS04530 0.86 +0.0 992,201 + -0.2 992,296 + HSERO_RS04535 0.50 -0.5 992,314 - HSERO_RS04535 0.59 -0.3 992,492 - HSERO_RS04540 0.19 +0.7 992,516 - HSERO_RS04540 0.24 -0.1 992,576 + HSERO_RS04540 0.36 +0.0 992,576 + HSERO_RS04540 0.36 +0.4 992,611 + HSERO_RS04540 0.43 +0.0 992,652 - HSERO_RS04540 0.51 +0.4 992,765 - HSERO_RS04540 0.74 -0.3
Or see this region's nucleotide sequence