Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04335 and HSERO_RS04340 overlap by 4 nucleotides HSERO_RS04340 and HSERO_RS04345 are separated by 196 nucleotides
HSERO_RS04335: HSERO_RS04335 - sodium:proton antiporter, at 957,794 to 959,002
_RS04335
HSERO_RS04340: HSERO_RS04340 - gamma-glutamyl ligase, at 958,999 to 960,228
_RS04340
HSERO_RS04345: HSERO_RS04345 - membrane protein, at 960,425 to 961,633
_RS04345
Position (kb) 958
959
960
961 Strain fitness (log2 ratio) -1
0
1
2 at 958.202 kb on - strand, within HSERO_RS04335 at 958.322 kb on + strand, within HSERO_RS04335 at 958.395 kb on + strand, within HSERO_RS04335 at 958.995 kb on - strand at 959.039 kb on + strand at 959.071 kb on - strand at 959.078 kb on - strand at 959.083 kb on - strand at 959.100 kb on + strand at 959.282 kb on + strand, within HSERO_RS04340 at 959.379 kb on - strand, within HSERO_RS04340 at 959.462 kb on + strand, within HSERO_RS04340 at 959.548 kb on + strand, within HSERO_RS04340 at 959.604 kb on - strand, within HSERO_RS04340 at 959.704 kb on + strand, within HSERO_RS04340 at 959.921 kb on - strand, within HSERO_RS04340 at 959.942 kb on + strand, within HSERO_RS04340 at 960.200 kb on + strand at 960.287 kb on + strand at 960.295 kb on - strand at 960.390 kb on + strand at 960.390 kb on + strand at 960.390 kb on + strand at 960.535 kb on - strand at 960.553 kb on + strand, within HSERO_RS04345 at 960.694 kb on + strand, within HSERO_RS04345 at 960.786 kb on - strand, within HSERO_RS04345 at 960.830 kb on + strand, within HSERO_RS04345 at 960.830 kb on + strand, within HSERO_RS04345 at 961.060 kb on + strand, within HSERO_RS04345 at 961.093 kb on - strand, within HSERO_RS04345 at 961.209 kb on + strand, within HSERO_RS04345
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 958,202 - HSERO_RS04335 0.34 -0.1 958,322 + HSERO_RS04335 0.44 +2.0 958,395 + HSERO_RS04335 0.50 +1.1 958,995 - +1.9 959,039 + +0.0 959,071 - +1.0 959,078 - +0.2 959,083 - +0.5 959,100 + +0.6 959,282 + HSERO_RS04340 0.23 +1.5 959,379 - HSERO_RS04340 0.31 +1.4 959,462 + HSERO_RS04340 0.38 +0.8 959,548 + HSERO_RS04340 0.45 +1.2 959,604 - HSERO_RS04340 0.49 +0.3 959,704 + HSERO_RS04340 0.57 +0.3 959,921 - HSERO_RS04340 0.75 +0.1 959,942 + HSERO_RS04340 0.77 +0.5 960,200 + +0.1 960,287 + +0.3 960,295 - +0.5 960,390 + +0.1 960,390 + +0.0 960,390 + +0.4 960,535 - -0.8 960,553 + HSERO_RS04345 0.11 -0.2 960,694 + HSERO_RS04345 0.22 -0.1 960,786 - HSERO_RS04345 0.30 -0.2 960,830 + HSERO_RS04345 0.33 -0.1 960,830 + HSERO_RS04345 0.33 +0.2 961,060 + HSERO_RS04345 0.53 -0.4 961,093 - HSERO_RS04345 0.55 +0.1 961,209 + HSERO_RS04345 0.65 -0.4
Or see this region's nucleotide sequence