Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04330 and HSERO_RS04335 are separated by 358 nucleotides HSERO_RS04335 and HSERO_RS04340 overlap by 4 nucleotides
HSERO_RS04330: HSERO_RS04330 - ATP-dependent exonuclease, at 953,938 to 957,435
_RS04330
HSERO_RS04335: HSERO_RS04335 - sodium:proton antiporter, at 957,794 to 959,002
_RS04335
HSERO_RS04340: HSERO_RS04340 - gamma-glutamyl ligase, at 958,999 to 960,228
_RS04340
Position (kb) 957
958
959
960 Strain fitness (log2 ratio) -2
-1
0
1
2 at 957.054 kb on - strand, within HSERO_RS04330 at 957.095 kb on + strand at 957.198 kb on - strand at 957.252 kb on - strand at 957.252 kb on - strand at 957.252 kb on - strand at 957.276 kb on + strand at 957.304 kb on - strand at 957.339 kb on + strand at 957.345 kb on - strand at 957.347 kb on - strand at 957.419 kb on + strand at 957.429 kb on + strand at 957.429 kb on + strand at 957.448 kb on - strand at 957.454 kb on + strand at 957.462 kb on - strand at 957.462 kb on - strand at 957.469 kb on - strand at 957.530 kb on + strand at 957.603 kb on - strand at 957.618 kb on - strand at 957.674 kb on + strand at 957.732 kb on + strand at 957.740 kb on - strand at 957.740 kb on - strand at 957.753 kb on - strand at 957.769 kb on + strand at 957.789 kb on + strand at 957.789 kb on + strand at 957.791 kb on + strand at 957.932 kb on + strand, within HSERO_RS04335 at 958.202 kb on - strand, within HSERO_RS04335 at 958.322 kb on + strand, within HSERO_RS04335 at 958.395 kb on + strand, within HSERO_RS04335 at 958.995 kb on - strand at 959.039 kb on + strand at 959.071 kb on - strand at 959.078 kb on - strand at 959.083 kb on - strand at 959.100 kb on + strand at 959.282 kb on + strand, within HSERO_RS04340 at 959.379 kb on - strand, within HSERO_RS04340 at 959.462 kb on + strand, within HSERO_RS04340 at 959.548 kb on + strand, within HSERO_RS04340 at 959.604 kb on - strand, within HSERO_RS04340 at 959.704 kb on + strand, within HSERO_RS04340 at 959.921 kb on - strand, within HSERO_RS04340 at 959.942 kb on + strand, within HSERO_RS04340
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 957,054 - HSERO_RS04330 0.89 -1.1 957,095 + -0.3 957,198 - -1.5 957,252 - -0.0 957,252 - -1.2 957,252 - -0.9 957,276 + -2.3 957,304 - -0.2 957,339 + -0.3 957,345 - -0.1 957,347 - -0.8 957,419 + -0.2 957,429 + +0.0 957,429 + -0.0 957,448 - +1.0 957,454 + +0.5 957,462 - -0.6 957,462 - +0.1 957,469 - +0.9 957,530 + +0.1 957,603 - +0.4 957,618 - -0.5 957,674 + +0.4 957,732 + -0.0 957,740 - +0.2 957,740 - +1.2 957,753 - +2.0 957,769 + +0.3 957,789 + +0.7 957,789 + +0.6 957,791 + +0.6 957,932 + HSERO_RS04335 0.11 +0.6 958,202 - HSERO_RS04335 0.34 -0.1 958,322 + HSERO_RS04335 0.44 +2.0 958,395 + HSERO_RS04335 0.50 +1.1 958,995 - +1.9 959,039 + +0.0 959,071 - +1.0 959,078 - +0.2 959,083 - +0.5 959,100 + +0.6 959,282 + HSERO_RS04340 0.23 +1.5 959,379 - HSERO_RS04340 0.31 +1.4 959,462 + HSERO_RS04340 0.38 +0.8 959,548 + HSERO_RS04340 0.45 +1.2 959,604 - HSERO_RS04340 0.49 +0.3 959,704 + HSERO_RS04340 0.57 +0.3 959,921 - HSERO_RS04340 0.75 +0.1 959,942 + HSERO_RS04340 0.77 +0.5
Or see this region's nucleotide sequence