Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03990 and HSERO_RS03995 are separated by 2 nucleotides HSERO_RS03995 and HSERO_RS04000 are separated by 93 nucleotides HSERO_RS04000 and HSERO_RS04005 are separated by 42 nucleotides
HSERO_RS03990: HSERO_RS03990 - type III secretion protein, at 875,333 to 876,448
_RS03990
HSERO_RS03995: HSERO_RS03995 - hypothetical protein, at 876,451 to 876,981
_RS03995
HSERO_RS04000: HSERO_RS04000 - type III secretion protein, at 877,075 to 877,464
_RS04000
HSERO_RS04005: HSERO_RS04005 - type III secretion protein, at 877,507 to 878,358
_RS04005
Position (kb) 876
877 Strain fitness (log2 ratio) -1
0
1
2 at 875.551 kb on - strand, within HSERO_RS03990 at 875.715 kb on - strand, within HSERO_RS03990 at 875.720 kb on - strand, within HSERO_RS03990 at 875.752 kb on + strand, within HSERO_RS03990 at 875.760 kb on - strand, within HSERO_RS03990 at 875.764 kb on + strand, within HSERO_RS03990 at 875.764 kb on + strand, within HSERO_RS03990 at 875.772 kb on - strand, within HSERO_RS03990 at 875.857 kb on - strand, within HSERO_RS03990 at 875.964 kb on + strand, within HSERO_RS03990 at 876.031 kb on + strand, within HSERO_RS03990 at 876.219 kb on - strand, within HSERO_RS03990 at 876.240 kb on - strand, within HSERO_RS03990 at 876.343 kb on - strand at 876.375 kb on + strand at 876.494 kb on + strand at 876.609 kb on + strand, within HSERO_RS03995 at 876.806 kb on - strand, within HSERO_RS03995 at 876.968 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.027 kb on - strand at 877.027 kb on - strand at 877.063 kb on + strand at 877.085 kb on + strand at 877.093 kb on - strand at 877.225 kb on + strand, within HSERO_RS04000 at 877.415 kb on - strand, within HSERO_RS04000 at 877.671 kb on + strand, within HSERO_RS04005 at 877.678 kb on + strand at 877.970 kb on + strand, within HSERO_RS04005 at 877.978 kb on - strand, within HSERO_RS04005
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 875,551 - HSERO_RS03990 0.20 -0.8 875,715 - HSERO_RS03990 0.34 +0.3 875,720 - HSERO_RS03990 0.35 +0.6 875,752 + HSERO_RS03990 0.38 +1.1 875,760 - HSERO_RS03990 0.38 -0.1 875,764 + HSERO_RS03990 0.39 -1.0 875,764 + HSERO_RS03990 0.39 +0.1 875,772 - HSERO_RS03990 0.39 -0.7 875,857 - HSERO_RS03990 0.47 -0.7 875,964 + HSERO_RS03990 0.57 -0.4 876,031 + HSERO_RS03990 0.63 -1.1 876,219 - HSERO_RS03990 0.79 +0.0 876,240 - HSERO_RS03990 0.81 +1.6 876,343 - +0.6 876,375 + +0.4 876,494 + +0.6 876,609 + HSERO_RS03995 0.30 +0.1 876,806 - HSERO_RS03995 0.67 +1.2 876,968 + -0.2 877,019 + +0.3 877,019 + -0.6 877,019 + +0.3 877,027 - +0.3 877,027 - -0.3 877,063 + +0.9 877,085 + +0.3 877,093 - +0.9 877,225 + HSERO_RS04000 0.38 +0.3 877,415 - HSERO_RS04000 0.87 -0.1 877,671 + HSERO_RS04005 0.19 +1.9 877,678 + +0.9 877,970 + HSERO_RS04005 0.54 +0.1 877,978 - HSERO_RS04005 0.55 +1.1
Or see this region's nucleotide sequence