Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03940 and HSERO_RS03945 are separated by 149 nucleotides HSERO_RS03945 and HSERO_RS03950 are separated by 93 nucleotides HSERO_RS03950 and HSERO_RS03955 overlap by 7 nucleotides
HSERO_RS03940: HSERO_RS03940 - hypothetical protein, at 867,372 to 868,112
_RS03940
HSERO_RS03945: HSERO_RS03945 - hypothetical protein, at 868,262 to 868,645
_RS03945
HSERO_RS03950: HSERO_RS03950 - type III secretion HrpQ protein, at 868,739 to 869,773
_RS03950
HSERO_RS03955: HSERO_RS03955 - ATP synthase, at 869,767 to 871,149
_RS03955
Position (kb) 868
869
870 Strain fitness (log2 ratio) -2
-1
0
1 at 867.894 kb on + strand, within HSERO_RS03940 at 867.914 kb on - strand, within HSERO_RS03940 at 868.066 kb on + strand at 868.072 kb on - strand at 868.099 kb on - strand at 868.106 kb on + strand at 868.737 kb on - strand at 868.836 kb on + strand at 868.849 kb on - strand, within HSERO_RS03950 at 868.870 kb on + strand, within HSERO_RS03950 at 868.905 kb on - strand, within HSERO_RS03950 at 869.145 kb on + strand, within HSERO_RS03950 at 869.551 kb on + strand, within HSERO_RS03950 at 869.551 kb on + strand, within HSERO_RS03950 at 869.753 kb on + strand at 869.754 kb on + strand at 869.761 kb on - strand at 869.886 kb on - strand at 869.898 kb on + strand at 870.316 kb on - strand, within HSERO_RS03955 at 870.337 kb on + strand, within HSERO_RS03955 at 870.502 kb on + strand, within HSERO_RS03955
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 867,894 + HSERO_RS03940 0.70 -0.5 867,914 - HSERO_RS03940 0.73 +0.1 868,066 + +0.6 868,072 - -0.2 868,099 - +0.4 868,106 + -0.2 868,737 - +0.6 868,836 + +0.2 868,849 - HSERO_RS03950 0.11 +0.9 868,870 + HSERO_RS03950 0.13 +0.8 868,905 - HSERO_RS03950 0.16 +1.0 869,145 + HSERO_RS03950 0.39 -0.4 869,551 + HSERO_RS03950 0.78 +0.0 869,551 + HSERO_RS03950 0.78 +1.5 869,753 + +0.0 869,754 + +0.1 869,761 - -2.1 869,886 - +0.7 869,898 + +0.1 870,316 - HSERO_RS03955 0.40 -0.9 870,337 + HSERO_RS03955 0.41 +0.6 870,502 + HSERO_RS03955 0.53 +0.1
Or see this region's nucleotide sequence