Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03870 and HSERO_RS03875 are separated by 587 nucleotides HSERO_RS03875 and HSERO_RS03880 are separated by 61 nucleotides HSERO_RS03880 and HSERO_RS03885 are separated by 257 nucleotides
HSERO_RS03870: HSERO_RS03870 - hypothetical protein, at 854,896 to 855,240
_RS03870
HSERO_RS03875: HSERO_RS03875 - hypothetical protein, at 855,828 to 856,037
_RS03875
HSERO_RS03880: HSERO_RS03880 - hypothetical protein, at 856,099 to 856,281
_RS03880
HSERO_RS03885: HSERO_RS03885 - hypothetical protein, at 856,539 to 858,266
_RS03885
Position (kb) 855
856
857 Strain fitness (log2 ratio) -1
0
1 at 854.951 kb on + strand, within HSERO_RS03870 at 854.959 kb on - strand, within HSERO_RS03870 at 855.117 kb on - strand, within HSERO_RS03870 at 855.175 kb on - strand at 855.365 kb on - strand at 855.365 kb on - strand at 855.437 kb on + strand at 855.471 kb on - strand at 855.545 kb on + strand at 855.658 kb on - strand at 855.735 kb on - strand at 855.928 kb on + strand, within HSERO_RS03875 at 855.953 kb on + strand, within HSERO_RS03875 at 856.260 kb on - strand, within HSERO_RS03880 at 856.566 kb on + strand at 856.574 kb on - strand at 856.762 kb on - strand, within HSERO_RS03885 at 856.762 kb on - strand, within HSERO_RS03885 at 856.845 kb on + strand, within HSERO_RS03885 at 857.032 kb on - strand, within HSERO_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 854,951 + HSERO_RS03870 0.16 -0.1 854,959 - HSERO_RS03870 0.18 -0.1 855,117 - HSERO_RS03870 0.64 +0.1 855,175 - +0.3 855,365 - +0.2 855,365 - +1.0 855,437 + -0.4 855,471 - +0.3 855,545 + +0.3 855,658 - +1.1 855,735 - +0.7 855,928 + HSERO_RS03875 0.48 +0.9 855,953 + HSERO_RS03875 0.60 +1.1 856,260 - HSERO_RS03880 0.88 -1.1 856,566 + -1.5 856,574 - -1.4 856,762 - HSERO_RS03885 0.13 -0.3 856,762 - HSERO_RS03885 0.13 +0.5 856,845 + HSERO_RS03885 0.18 +1.3 857,032 - HSERO_RS03885 0.29 +0.5
Or see this region's nucleotide sequence