Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03575

Experiment: Carbon source Phenylacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03565 and HSERO_RS03570 are separated by 37 nucleotidesHSERO_RS03570 and HSERO_RS03575 are separated by 59 nucleotidesHSERO_RS03575 and HSERO_RS03580 are separated by 90 nucleotides HSERO_RS03565: HSERO_RS03565 - metal-dependent hydrolase, at 777,094 to 778,083 _RS03565 HSERO_RS03570: HSERO_RS03570 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 778,121 to 778,924 _RS03570 HSERO_RS03575: HSERO_RS03575 - D,D-heptose 1,7-bisphosphate phosphatase, at 778,984 to 779,541 _RS03575 HSERO_RS03580: HSERO_RS03580 - glycyl-tRNA synthetase subunit beta, at 779,632 to 781,752 _RS03580 Position (kb) 778 779 780Strain fitness (log2 ratio) -1 0 1at 778.118 kb on + strandat 778.119 kb on + strandat 778.127 kb on - strandat 778.981 kb on + strandat 779.114 kb on - strand, within HSERO_RS03575at 779.118 kb on + strand, within HSERO_RS03575at 779.350 kb on - strand, within HSERO_RS03575at 779.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM
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778,118 + -0.2
778,119 + -0.0
778,127 - +1.1
778,981 + -0.7
779,114 - HSERO_RS03575 0.23 +0.3
779,118 + HSERO_RS03575 0.24 +1.5
779,350 - HSERO_RS03575 0.66 +0.1
779,637 - +0.0

Or see this region's nucleotide sequence