Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03405 and HSERO_RS03410 are separated by 220 nucleotides HSERO_RS03410 and HSERO_RS03415 are separated by 105 nucleotides HSERO_RS03415 and HSERO_RS03420 are separated by 58 nucleotides HSERO_RS03420 and HSERO_RS03425 are separated by 321 nucleotides
HSERO_RS03405: HSERO_RS03405 - pyridoxamine 5'-phosphate oxidase, at 746,866 to 747,504
_RS03405
HSERO_RS03410: HSERO_RS03410 - polyisoprenoid-binding protein, at 747,725 to 748,297
_RS03410
HSERO_RS03415: HSERO_RS03415 - polyisoprenoid-binding protein, at 748,403 to 748,966
_RS03415
HSERO_RS03420: HSERO_RS03420 - cytochrome B561, at 749,025 to 749,549
_RS03420
HSERO_RS03425: HSERO_RS03425 - adenylosuccinate lyase, at 749,871 to 751,238
_RS03425
Position (kb) 748
749 Strain fitness (log2 ratio) -1
0
1 at 747.739 kb on - strand at 747.903 kb on - strand, within HSERO_RS03410 at 747.989 kb on - strand, within HSERO_RS03410 at 748.037 kb on - strand, within HSERO_RS03410 at 748.221 kb on - strand, within HSERO_RS03410 at 748.308 kb on + strand at 748.679 kb on - strand, within HSERO_RS03415 at 748.768 kb on - strand, within HSERO_RS03415 at 748.870 kb on - strand, within HSERO_RS03415 at 748.993 kb on + strand at 749.046 kb on - strand at 749.293 kb on - strand, within HSERO_RS03420 at 749.387 kb on - strand, within HSERO_RS03420 at 749.544 kb on + strand at 749.552 kb on - strand at 749.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 747,739 - +0.9 747,903 - HSERO_RS03410 0.31 +0.3 747,989 - HSERO_RS03410 0.46 -0.9 748,037 - HSERO_RS03410 0.54 -0.2 748,221 - HSERO_RS03410 0.87 +0.7 748,308 + -0.2 748,679 - HSERO_RS03415 0.49 +0.3 748,768 - HSERO_RS03415 0.65 +1.5 748,870 - HSERO_RS03415 0.83 +0.9 748,993 + -0.0 749,046 - +0.1 749,293 - HSERO_RS03420 0.51 +0.5 749,387 - HSERO_RS03420 0.69 -0.6 749,544 + +0.6 749,552 - +0.5 749,774 - +0.8
Or see this region's nucleotide sequence