Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02800

Experiment: Carbon source Phenylacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02795 and HSERO_RS02800 are separated by 220 nucleotidesHSERO_RS02800 and HSERO_RS02805 are separated by 26 nucleotides HSERO_RS02795: HSERO_RS02795 - alcohol dehydrogenase, at 614,365 to 615,525 _RS02795 HSERO_RS02800: HSERO_RS02800 - hypothetical protein, at 615,746 to 616,729 _RS02800 HSERO_RS02805: HSERO_RS02805 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 616,756 to 617,784 _RS02805 Position (kb) 615 616 617Strain fitness (log2 ratio) -1 0 1at 615.049 kb on + strand, within HSERO_RS02795at 615.342 kb on + strand, within HSERO_RS02795at 615.540 kb on + strandat 615.540 kb on + strandat 615.663 kb on - strandat 616.236 kb on - strand, within HSERO_RS02800at 616.694 kb on - strandat 616.827 kb on + strandat 616.853 kb on + strandat 617.015 kb on - strand, within HSERO_RS02805at 617.341 kb on + strand, within HSERO_RS02805at 617.362 kb on + strand, within HSERO_RS02805at 617.383 kb on + strand, within HSERO_RS02805at 617.412 kb on + strand, within HSERO_RS02805at 617.420 kb on - strand, within HSERO_RS02805at 617.441 kb on + strand, within HSERO_RS02805at 617.612 kb on + strand, within HSERO_RS02805at 617.670 kb on + strand, within HSERO_RS02805

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM
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615,049 + HSERO_RS02795 0.59 -0.1
615,342 + HSERO_RS02795 0.84 +0.6
615,540 + -0.7
615,540 + -0.1
615,663 - +0.5
616,236 - HSERO_RS02800 0.50 +0.9
616,694 - +1.1
616,827 + -0.3
616,853 + +0.1
617,015 - HSERO_RS02805 0.25 +0.2
617,341 + HSERO_RS02805 0.57 +0.4
617,362 + HSERO_RS02805 0.59 -1.1
617,383 + HSERO_RS02805 0.61 -0.5
617,412 + HSERO_RS02805 0.64 +0.1
617,420 - HSERO_RS02805 0.65 +0.1
617,441 + HSERO_RS02805 0.67 -0.2
617,612 + HSERO_RS02805 0.83 -0.9
617,670 + HSERO_RS02805 0.89 +0.1

Or see this region's nucleotide sequence