Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02420 and HSERO_RS02425 are separated by 24 nucleotides HSERO_RS02425 and HSERO_RS02430 are separated by 182 nucleotides HSERO_RS02430 and HSERO_RS02435 are separated by 19 nucleotides
HSERO_RS02420: HSERO_RS02420 - TetR family transcriptional regulator, at 531,912 to 532,547
_RS02420
HSERO_RS02425: HSERO_RS02425 - transcriptional activator, at 532,572 to 533,069
_RS02425
HSERO_RS02430: HSERO_RS02430 - sulfurtransferase, at 533,252 to 533,575
_RS02430
HSERO_RS02435: HSERO_RS02435 - protein-L-isoaspartate O-methyltransferase, at 533,595 to 534,260
_RS02435
Position (kb) 532
533
534 Strain fitness (log2 ratio) -1
0
1 at 532.470 kb on - strand, within HSERO_RS02420 at 532.568 kb on + strand at 532.643 kb on + strand, within HSERO_RS02425 at 532.732 kb on - strand, within HSERO_RS02425 at 532.872 kb on + strand, within HSERO_RS02425 at 532.881 kb on + strand, within HSERO_RS02425 at 532.889 kb on - strand at 533.023 kb on + strand at 533.031 kb on - strand at 533.072 kb on - strand at 533.309 kb on - strand, within HSERO_RS02430 at 533.392 kb on + strand, within HSERO_RS02430 at 533.413 kb on + strand, within HSERO_RS02430 at 533.564 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 532,470 - HSERO_RS02420 0.88 -1.7 532,568 + +0.3 532,643 + HSERO_RS02425 0.14 +0.6 532,732 - HSERO_RS02425 0.32 +1.1 532,872 + HSERO_RS02425 0.60 +0.4 532,881 + HSERO_RS02425 0.62 +0.4 532,889 - +1.3 533,023 + +0.5 533,031 - +1.5 533,072 - +0.3 533,309 - HSERO_RS02430 0.18 -0.3 533,392 + HSERO_RS02430 0.43 +0.1 533,413 + HSERO_RS02430 0.50 +0.3 533,564 + +0.5
Or see this region's nucleotide sequence