Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01980 and HSERO_RS01985 are separated by 67 nucleotides HSERO_RS01985 and HSERO_RS01990 are separated by 88 nucleotides HSERO_RS01990 and HSERO_RS01995 are separated by 26 nucleotides
HSERO_RS01980: HSERO_RS01980 - ribonuclease II, at 433,147 to 435,201
_RS01980
HSERO_RS01985: HSERO_RS01985 - energy transducer TonB, at 435,269 to 436,150
_RS01985
HSERO_RS01990: HSERO_RS01990 - shikimate 5-dehydrogenase, at 436,239 to 437,054
_RS01990
HSERO_RS01995: HSERO_RS01995 - peptidoglycan transglycosylase, at 437,081 to 437,788
_RS01995
Position (kb) 435
436
437 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 435.193 kb on + strand at 435.225 kb on - strand at 435.232 kb on - strand at 435.267 kb on + strand at 435.308 kb on - strand at 435.308 kb on - strand at 435.313 kb on - strand at 435.333 kb on + strand at 435.341 kb on - strand at 435.368 kb on - strand, within HSERO_RS01985 at 435.694 kb on + strand, within HSERO_RS01985 at 435.795 kb on + strand, within HSERO_RS01985 at 435.830 kb on + strand, within HSERO_RS01985 at 436.226 kb on + strand at 436.449 kb on - strand, within HSERO_RS01990 at 436.484 kb on - strand, within HSERO_RS01990 at 436.551 kb on - strand at 436.570 kb on - strand, within HSERO_RS01990 at 436.853 kb on - strand, within HSERO_RS01990 at 436.875 kb on - strand, within HSERO_RS01990 at 437.112 kb on - strand at 437.117 kb on + strand at 437.117 kb on + strand at 437.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 435,193 + -0.1 435,225 - -0.1 435,232 - +0.0 435,267 + +0.1 435,308 - +0.2 435,308 - +0.4 435,313 - +0.6 435,333 + +1.0 435,341 - +0.3 435,368 - HSERO_RS01985 0.11 +0.3 435,694 + HSERO_RS01985 0.48 +1.6 435,795 + HSERO_RS01985 0.60 +0.6 435,830 + HSERO_RS01985 0.64 -0.2 436,226 + -0.6 436,449 - HSERO_RS01990 0.26 -3.9 436,484 - HSERO_RS01990 0.30 -3.8 436,551 - -0.1 436,570 - HSERO_RS01990 0.41 -4.4 436,853 - HSERO_RS01990 0.75 -3.3 436,875 - HSERO_RS01990 0.78 -3.0 437,112 - -0.2 437,117 + -0.5 437,117 + -0.7 437,132 - +0.3
Or see this region's nucleotide sequence