Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01870 and HSERO_RS01875 overlap by 4 nucleotides HSERO_RS01875 and HSERO_RS01880 are separated by 3 nucleotides HSERO_RS01880 and HSERO_RS01885 are separated by 406 nucleotides
HSERO_RS01870: HSERO_RS01870 - ABC transporter permease, at 410,664 to 411,476
_RS01870
HSERO_RS01875: HSERO_RS01875 - hypothetical protein, at 411,473 to 411,757
_RS01875
HSERO_RS01880: HSERO_RS01880 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 411,761 to 412,384
_RS01880
HSERO_RS01885: HSERO_RS01885 - ribonucleotide-diphosphate reductase subunit alpha, at 412,791 to 415,775
_RS01885
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1 at 410.789 kb on + strand, within HSERO_RS01870 at 411.213 kb on - strand, within HSERO_RS01870 at 411.253 kb on + strand, within HSERO_RS01870 at 411.385 kb on + strand, within HSERO_RS01870 at 411.385 kb on + strand, within HSERO_RS01870 at 411.687 kb on + strand, within HSERO_RS01875 at 411.713 kb on + strand, within HSERO_RS01875 at 411.949 kb on - strand, within HSERO_RS01880 at 412.163 kb on + strand, within HSERO_RS01880 at 412.257 kb on + strand, within HSERO_RS01880 at 412.267 kb on + strand, within HSERO_RS01880 at 412.356 kb on + strand at 412.595 kb on - strand at 412.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 410,789 + HSERO_RS01870 0.15 +1.5 411,213 - HSERO_RS01870 0.68 -0.2 411,253 + HSERO_RS01870 0.72 -1.3 411,385 + HSERO_RS01870 0.89 -1.9 411,385 + HSERO_RS01870 0.89 -1.3 411,687 + HSERO_RS01875 0.75 -0.1 411,713 + HSERO_RS01875 0.84 -0.3 411,949 - HSERO_RS01880 0.30 +0.6 412,163 + HSERO_RS01880 0.64 -0.1 412,257 + HSERO_RS01880 0.79 +0.3 412,267 + HSERO_RS01880 0.81 +0.8 412,356 + +0.3 412,595 - +0.1 412,654 - +1.5
Or see this region's nucleotide sequence