Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01285 and HSERO_RS01290 are separated by 102 nucleotides HSERO_RS01290 and HSERO_RS01295 are separated by 237 nucleotides
HSERO_RS01285: HSERO_RS01285 - diguanylate cyclase, at 272,282 to 273,436
_RS01285
HSERO_RS01290: HSERO_RS01290 - hypothetical protein, at 273,539 to 273,724
_RS01290
HSERO_RS01295: HSERO_RS01295 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 273,962 to 275,932
_RS01295
Position (kb) 273
274 Strain fitness (log2 ratio) -1
0
1
2 at 272.641 kb on + strand, within HSERO_RS01285 at 272.696 kb on + strand, within HSERO_RS01285 at 272.735 kb on - strand, within HSERO_RS01285 at 272.987 kb on + strand, within HSERO_RS01285 at 272.995 kb on - strand, within HSERO_RS01285 at 273.000 kb on + strand, within HSERO_RS01285 at 273.107 kb on - strand, within HSERO_RS01285 at 273.207 kb on - strand, within HSERO_RS01285 at 273.286 kb on + strand, within HSERO_RS01285 at 273.406 kb on + strand at 273.407 kb on + strand at 273.451 kb on + strand at 273.451 kb on + strand at 273.451 kb on + strand at 273.459 kb on - strand at 273.485 kb on - strand at 273.515 kb on - strand at 273.608 kb on - strand, within HSERO_RS01290 at 273.682 kb on + strand, within HSERO_RS01290 at 273.682 kb on - strand, within HSERO_RS01290 at 273.732 kb on - strand at 273.950 kb on + strand at 273.950 kb on - strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.091 kb on - strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.131 kb on - strand at 274.242 kb on + strand, within HSERO_RS01295 at 274.304 kb on + strand, within HSERO_RS01295 at 274.392 kb on + strand, within HSERO_RS01295 at 274.455 kb on + strand, within HSERO_RS01295 at 274.463 kb on - strand, within HSERO_RS01295 at 274.465 kb on + strand, within HSERO_RS01295 at 274.490 kb on + strand at 274.544 kb on - strand, within HSERO_RS01295 at 274.548 kb on + strand, within HSERO_RS01295 at 274.590 kb on - strand, within HSERO_RS01295 at 274.723 kb on + strand, within HSERO_RS01295
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 272,641 + HSERO_RS01285 0.31 -0.3 272,696 + HSERO_RS01285 0.36 +0.5 272,735 - HSERO_RS01285 0.39 +2.1 272,987 + HSERO_RS01285 0.61 -0.3 272,995 - HSERO_RS01285 0.62 -0.8 273,000 + HSERO_RS01285 0.62 -0.6 273,107 - HSERO_RS01285 0.71 +0.4 273,207 - HSERO_RS01285 0.80 -0.2 273,286 + HSERO_RS01285 0.87 +0.0 273,406 + +0.4 273,407 + -0.3 273,451 + -0.5 273,451 + -0.8 273,451 + -0.3 273,459 - +1.6 273,485 - +0.5 273,515 - -0.3 273,608 - HSERO_RS01290 0.37 +1.5 273,682 + HSERO_RS01290 0.77 +0.4 273,682 - HSERO_RS01290 0.77 +0.1 273,732 - +0.4 273,950 + -0.0 273,950 - +0.1 274,027 + +0.6 274,027 + +0.4 274,091 - +0.5 274,123 + +0.1 274,123 + +0.2 274,123 + -1.0 274,131 - -0.1 274,242 + HSERO_RS01295 0.14 +0.0 274,304 + HSERO_RS01295 0.17 -1.5 274,392 + HSERO_RS01295 0.22 -0.3 274,455 + HSERO_RS01295 0.25 -0.3 274,463 - HSERO_RS01295 0.25 -1.0 274,465 + HSERO_RS01295 0.26 -0.4 274,490 + -0.8 274,544 - HSERO_RS01295 0.30 -0.1 274,548 + HSERO_RS01295 0.30 +0.5 274,590 - HSERO_RS01295 0.32 -0.2 274,723 + HSERO_RS01295 0.39 +0.3
Or see this region's nucleotide sequence