Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01090

Experiment: Carbon source Phenylacetic 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS01085 and HSERO_RS01090 are separated by 35 nucleotidesHSERO_RS01090 and HSERO_RS01095 are separated by 240 nucleotides HSERO_RS01085: HSERO_RS01085 - tail protein, at 229,013 to 230,455 _RS01085 HSERO_RS01090: HSERO_RS01090 - hypothetical protein, at 230,491 to 230,679 _RS01090 HSERO_RS01095: HSERO_RS01095 - hypothetical protein, at 230,920 to 231,252 _RS01095 Position (kb) 230 231Strain fitness (log2 ratio) -1 0 1at 229.547 kb on + strand, within HSERO_RS01085at 229.649 kb on - strand, within HSERO_RS01085at 229.760 kb on + strand, within HSERO_RS01085at 229.855 kb on + strand, within HSERO_RS01085at 229.855 kb on + strand, within HSERO_RS01085at 229.865 kb on - strand, within HSERO_RS01085at 229.976 kb on + strandat 230.026 kb on + strand, within HSERO_RS01085at 230.034 kb on - strand, within HSERO_RS01085at 230.379 kb on + strandat 230.397 kb on - strandat 230.433 kb on - strandat 230.544 kb on + strand, within HSERO_RS01090at 230.600 kb on - strand, within HSERO_RS01090at 230.836 kb on + strandat 230.855 kb on - strandat 230.926 kb on - strandat 230.968 kb on + strand, within HSERO_RS01095at 230.999 kb on + strand, within HSERO_RS01095at 231.357 kb on - strandat 231.459 kb on - strandat 231.588 kb on + strandat 231.664 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM
remove
229,547 + HSERO_RS01085 0.37 -0.1
229,649 - HSERO_RS01085 0.44 +0.0
229,760 + HSERO_RS01085 0.52 -1.3
229,855 + HSERO_RS01085 0.58 +1.0
229,855 + HSERO_RS01085 0.58 -0.5
229,865 - HSERO_RS01085 0.59 -0.6
229,976 + +1.0
230,026 + HSERO_RS01085 0.70 +0.5
230,034 - HSERO_RS01085 0.71 +0.4
230,379 + -0.4
230,397 - -0.3
230,433 - +0.1
230,544 + HSERO_RS01090 0.28 +1.7
230,600 - HSERO_RS01090 0.58 +0.3
230,836 + -0.9
230,855 - -0.0
230,926 - -0.3
230,968 + HSERO_RS01095 0.14 -0.4
230,999 + HSERO_RS01095 0.24 -0.3
231,357 - +0.4
231,459 - -1.4
231,588 + -0.0
231,664 - -1.0

Or see this region's nucleotide sequence