Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00440 and HSERO_RS00445 are separated by 53 nucleotides HSERO_RS00445 and HSERO_RS00450 are separated by 254 nucleotides HSERO_RS00450 and HSERO_RS00455 are separated by 311 nucleotides
HSERO_RS00440: HSERO_RS00440 - PTS fructose transporter subunit IIA, at 103,603 to 104,079
_RS00440
HSERO_RS00445: HSERO_RS00445 - phosphocarrier protein HPr, at 104,133 to 104,402
_RS00445
HSERO_RS00450: HSERO_RS00450 - phosphoenolpyruvate-protein phosphotransferase, at 104,657 to 106,444
_RS00450
HSERO_RS00455: HSERO_RS00455 - homoserine O-acetyltransferase, at 106,756 to 107,895
_RS00455
Position (kb) 104
105
106
107 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 104.335 kb on + strand, within HSERO_RS00445 at 104.460 kb on - strand at 104.529 kb on + strand at 104.607 kb on - strand at 104.626 kb on + strand at 105.086 kb on - strand, within HSERO_RS00450 at 105.305 kb on - strand, within HSERO_RS00450 at 105.305 kb on - strand, within HSERO_RS00450 at 105.398 kb on + strand, within HSERO_RS00450 at 105.551 kb on + strand, within HSERO_RS00450 at 105.620 kb on + strand, within HSERO_RS00450 at 105.679 kb on - strand, within HSERO_RS00450 at 106.578 kb on - strand at 106.712 kb on + strand at 106.717 kb on + strand at 106.720 kb on - strand at 106.729 kb on + strand at 106.756 kb on - strand at 106.784 kb on - strand at 106.828 kb on - strand at 106.881 kb on + strand, within HSERO_RS00455 at 106.889 kb on - strand, within HSERO_RS00455 at 106.896 kb on + strand, within HSERO_RS00455 at 106.901 kb on + strand, within HSERO_RS00455 at 106.908 kb on + strand, within HSERO_RS00455 at 107.056 kb on - strand, within HSERO_RS00455 at 107.148 kb on + strand, within HSERO_RS00455 at 107.296 kb on + strand, within HSERO_RS00455
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 104,335 + HSERO_RS00445 0.75 -0.2 104,460 - -0.6 104,529 + -1.0 104,607 - +0.4 104,626 + -0.5 105,086 - HSERO_RS00450 0.24 +0.2 105,305 - HSERO_RS00450 0.36 +1.6 105,305 - HSERO_RS00450 0.36 +1.0 105,398 + HSERO_RS00450 0.41 +1.4 105,551 + HSERO_RS00450 0.50 +0.9 105,620 + HSERO_RS00450 0.54 +2.3 105,679 - HSERO_RS00450 0.57 +0.8 106,578 - -3.2 106,712 + -0.6 106,717 + +1.0 106,720 - -3.3 106,729 + -1.2 106,756 - -3.3 106,784 - -2.7 106,828 - -3.4 106,881 + HSERO_RS00455 0.11 -4.8 106,889 - HSERO_RS00455 0.12 -4.4 106,896 + HSERO_RS00455 0.12 -2.6 106,901 + HSERO_RS00455 0.13 -2.0 106,908 + HSERO_RS00455 0.13 -1.8 107,056 - HSERO_RS00455 0.26 -3.7 107,148 + HSERO_RS00455 0.34 -5.1 107,296 + HSERO_RS00455 0.47 -2.0
Or see this region's nucleotide sequence