Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24350

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24345 and AO353_24350 are separated by 485 nucleotidesAO353_24350 and AO353_24355 are separated by 97 nucleotides AO353_24345: AO353_24345 - hypothetical protein, at 5,356,175 to 5,356,585 _24345 AO353_24350: AO353_24350 - osmotically inducible protein C, at 5,357,071 to 5,357,625 _24350 AO353_24355: AO353_24355 - sugar dehydrogenase, at 5,357,723 to 5,358,496 _24355 Position (kb) 5357 5358Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5356.119 kb on - strandat 5356.157 kb on + strandat 5356.584 kb on - strandat 5356.630 kb on + strandat 5356.630 kb on + strandat 5356.652 kb on - strandat 5356.652 kb on - strandat 5356.673 kb on - strandat 5356.677 kb on - strandat 5356.677 kb on - strandat 5356.694 kb on - strandat 5356.757 kb on + strandat 5356.763 kb on - strandat 5356.775 kb on + strandat 5356.834 kb on + strandat 5356.834 kb on + strandat 5356.940 kb on + strandat 5356.940 kb on + strandat 5356.941 kb on - strandat 5357.163 kb on + strand, within AO353_24350at 5357.163 kb on + strand, within AO353_24350at 5357.163 kb on + strandat 5357.169 kb on + strand, within AO353_24350at 5357.218 kb on + strand, within AO353_24350at 5357.239 kb on + strand, within AO353_24350at 5357.239 kb on + strand, within AO353_24350at 5357.240 kb on - strand, within AO353_24350at 5357.321 kb on + strand, within AO353_24350at 5357.322 kb on - strand, within AO353_24350at 5357.357 kb on - strand, within AO353_24350at 5357.538 kb on + strand, within AO353_24350at 5357.539 kb on - strand, within AO353_24350at 5357.550 kb on + strand, within AO353_24350at 5357.550 kb on + strand, within AO353_24350at 5357.551 kb on - strand, within AO353_24350at 5357.566 kb on + strand, within AO353_24350at 5357.567 kb on - strand, within AO353_24350at 5357.586 kb on + strandat 5357.593 kb on - strandat 5357.717 kb on + strandat 5357.743 kb on + strandat 5357.743 kb on + strandat 5357.744 kb on - strandat 5357.744 kb on - strandat 5357.760 kb on + strandat 5357.760 kb on + strandat 5357.760 kb on + strandat 5357.761 kb on - strandat 5357.761 kb on - strandat 5357.777 kb on - strandat 5357.965 kb on + strand, within AO353_24355at 5357.965 kb on + strand, within AO353_24355at 5358.000 kb on + strand, within AO353_24355at 5358.000 kb on + strand, within AO353_24355at 5358.000 kb on + strand, within AO353_24355at 5358.000 kb on + strand, within AO353_24355at 5358.000 kb on + strand, within AO353_24355at 5358.001 kb on - strand, within AO353_24355at 5358.001 kb on - strand, within AO353_24355at 5358.041 kb on + strand, within AO353_24355at 5358.041 kb on + strandat 5358.042 kb on - strand, within AO353_24355at 5358.042 kb on - strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strandat 5358.050 kb on + strandat 5358.050 kb on + strand, within AO353_24355at 5358.050 kb on + strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.051 kb on - strand, within AO353_24355at 5358.093 kb on + strand, within AO353_24355at 5358.094 kb on - strand, within AO353_24355at 5358.192 kb on - strand, within AO353_24355at 5358.192 kb on - strand, within AO353_24355at 5358.305 kb on + strand, within AO353_24355at 5358.306 kb on - strand, within AO353_24355at 5358.306 kb on - strand, within AO353_24355at 5358.306 kb on - strand, within AO353_24355at 5358.454 kb on + strandat 5358.454 kb on + strandat 5358.455 kb on - strandat 5358.455 kb on - strandat 5358.455 kb on - strandat 5358.528 kb on + strandat 5358.528 kb on + strandat 5358.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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5,356,119 - -0.8
5,356,157 + +0.8
5,356,584 - -0.9
5,356,630 + -0.0
5,356,630 + +1.4
5,356,652 - -0.6
5,356,652 - +0.3
5,356,673 - -0.5
5,356,677 - +1.3
5,356,677 - -0.1
5,356,694 - -0.5
5,356,757 + -0.0
5,356,763 - +1.6
5,356,775 + -2.5
5,356,834 + +0.9
5,356,834 + -0.5
5,356,940 + -0.7
5,356,940 + +0.1
5,356,941 - +0.5
5,357,163 + AO353_24350 0.17 +0.3
5,357,163 + AO353_24350 0.17 -0.4
5,357,163 + +0.5
5,357,169 + AO353_24350 0.18 -1.6
5,357,218 + AO353_24350 0.26 -1.1
5,357,239 + AO353_24350 0.30 -1.6
5,357,239 + AO353_24350 0.30 -0.8
5,357,240 - AO353_24350 0.30 +0.2
5,357,321 + AO353_24350 0.45 -0.0
5,357,322 - AO353_24350 0.45 -0.9
5,357,357 - AO353_24350 0.52 -0.3
5,357,538 + AO353_24350 0.84 -1.4
5,357,539 - AO353_24350 0.84 +1.2
5,357,550 + AO353_24350 0.86 +1.6
5,357,550 + AO353_24350 0.86 +0.0
5,357,551 - AO353_24350 0.86 -0.2
5,357,566 + AO353_24350 0.89 -1.1
5,357,567 - AO353_24350 0.89 -1.4
5,357,586 + -0.2
5,357,593 - -0.2
5,357,717 + -0.1
5,357,743 + -0.3
5,357,743 + +0.1
5,357,744 - +0.2
5,357,744 - -0.0
5,357,760 + +0.1
5,357,760 + +0.6
5,357,760 + -0.4
5,357,761 - -0.2
5,357,761 - -0.5
5,357,777 - -0.6
5,357,965 + AO353_24355 0.31 -0.4
5,357,965 + AO353_24355 0.31 -1.9
5,358,000 + AO353_24355 0.36 +0.1
5,358,000 + AO353_24355 0.36 +0.1
5,358,000 + AO353_24355 0.36 -0.2
5,358,000 + AO353_24355 0.36 -1.2
5,358,000 + AO353_24355 0.36 +1.3
5,358,001 - AO353_24355 0.36 +1.2
5,358,001 - AO353_24355 0.36 -0.1
5,358,041 + AO353_24355 0.41 -0.3
5,358,041 + +0.8
5,358,042 - AO353_24355 0.41 -0.2
5,358,042 - AO353_24355 0.41 +2.8
5,358,050 + AO353_24355 0.42 -0.2
5,358,050 + AO353_24355 0.42 +1.4
5,358,050 + AO353_24355 0.42 -0.4
5,358,050 + AO353_24355 0.42 -0.6
5,358,050 + AO353_24355 0.42 -1.8
5,358,050 + AO353_24355 0.42 -0.7
5,358,050 + AO353_24355 0.42 +0.9
5,358,050 + AO353_24355 0.42 -0.4
5,358,050 + AO353_24355 0.42 +0.6
5,358,050 + AO353_24355 0.42 +0.3
5,358,050 + +2.4
5,358,050 + -1.5
5,358,050 + AO353_24355 0.42 -0.8
5,358,050 + AO353_24355 0.42 +0.2
5,358,051 - AO353_24355 0.42 +0.3
5,358,051 - AO353_24355 0.42 -1.6
5,358,051 - AO353_24355 0.42 +0.7
5,358,051 - AO353_24355 0.42 +0.5
5,358,051 - AO353_24355 0.42 +0.1
5,358,051 - AO353_24355 0.42 +0.6
5,358,051 - AO353_24355 0.42 -0.2
5,358,051 - AO353_24355 0.42 +2.7
5,358,051 - AO353_24355 0.42 -1.1
5,358,051 - AO353_24355 0.42 -0.8
5,358,093 + AO353_24355 0.48 -0.5
5,358,094 - AO353_24355 0.48 +0.3
5,358,192 - AO353_24355 0.61 -2.2
5,358,192 - AO353_24355 0.61 +0.0
5,358,305 + AO353_24355 0.75 -0.2
5,358,306 - AO353_24355 0.75 +0.4
5,358,306 - AO353_24355 0.75 +0.6
5,358,306 - AO353_24355 0.75 +1.7
5,358,454 + -0.0
5,358,454 + -0.0
5,358,455 - -1.9
5,358,455 - -1.2
5,358,455 - -0.2
5,358,528 + +0.8
5,358,528 + +0.4
5,358,529 - -0.9

Or see this region's nucleotide sequence