Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23135 and AO353_23140 are separated by 10 nucleotides AO353_23140 and AO353_23145 are separated by 10 nucleotides AO353_23145 and AO353_23150 overlap by 8 nucleotides AO353_23150 and AO353_23155 are separated by 1 nucleotides
AO353_23135: AO353_23135 - aldehyde dehydrogenase, at 5,076,595 to 5,078,091
_23135
AO353_23140: AO353_23140 - aspartate dehydrogenase, at 5,078,102 to 5,078,905
_23140
AO353_23145: AO353_23145 - hypothetical protein, at 5,078,916 to 5,080,598
_23145
AO353_23150: AO353_23150 - short-chain dehydrogenase, at 5,080,591 to 5,081,388
_23150
AO353_23155: AO353_23155 - IclR family transcriptional regulator, at 5,081,390 to 5,082,232
_23155
Position (kb) 5078
5079
5080
5081 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5078.024 kb on + strand at 5078.072 kb on - strand at 5078.103 kb on + strand at 5078.152 kb on - strand at 5078.152 kb on - strand at 5078.152 kb on - strand at 5078.152 kb on - strand at 5078.476 kb on - strand, within AO353_23140 at 5078.476 kb on - strand, within AO353_23140 at 5078.817 kb on + strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.896 kb on + strand at 5078.896 kb on + strand at 5078.897 kb on - strand at 5078.897 kb on - strand at 5078.897 kb on - strand at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.140 kb on - strand, within AO353_23145 at 5079.140 kb on - strand, within AO353_23145 at 5079.140 kb on - strand, within AO353_23145 at 5079.140 kb on - strand, within AO353_23145 at 5079.157 kb on + strand, within AO353_23145 at 5079.157 kb on + strand, within AO353_23145 at 5079.157 kb on + strand, within AO353_23145 at 5079.673 kb on + strand, within AO353_23145 at 5079.673 kb on + strand, within AO353_23145 at 5079.674 kb on - strand, within AO353_23145 at 5079.717 kb on - strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145 at 5080.249 kb on + strand, within AO353_23145 at 5080.249 kb on + strand, within AO353_23145 at 5080.408 kb on + strand, within AO353_23145 at 5080.408 kb on + strand, within AO353_23145 at 5080.408 kb on + strand, within AO353_23145 at 5080.409 kb on - strand, within AO353_23145 at 5080.409 kb on - strand, within AO353_23145 at 5080.583 kb on + strand at 5080.583 kb on + strand at 5080.583 kb on + strand at 5080.584 kb on - strand at 5080.584 kb on - strand at 5080.593 kb on - strand at 5080.593 kb on - strand at 5080.643 kb on + strand at 5080.643 kb on + strand at 5081.379 kb on - strand at 5081.448 kb on + strand at 5081.448 kb on + strand at 5081.449 kb on - strand at 5081.564 kb on - strand, within AO353_23155 at 5081.564 kb on - strand, within AO353_23155
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 5,078,024 + +0.9 5,078,072 - -0.3 5,078,103 + -1.4 5,078,152 - +0.6 5,078,152 - -1.9 5,078,152 - -0.8 5,078,152 - -0.8 5,078,476 - AO353_23140 0.47 +1.2 5,078,476 - AO353_23140 0.47 +1.6 5,078,817 + AO353_23140 0.89 +0.3 5,078,818 - AO353_23140 0.89 +0.7 5,078,818 - AO353_23140 0.89 -0.2 5,078,818 - AO353_23140 0.89 +0.1 5,078,818 - AO353_23140 0.89 +0.6 5,078,818 - AO353_23140 0.89 +0.2 5,078,896 + -0.5 5,078,896 + +1.2 5,078,897 - +0.0 5,078,897 - -0.3 5,078,897 - -0.8 5,079,139 + AO353_23145 0.13 +0.3 5,079,139 + AO353_23145 0.13 +1.3 5,079,139 + AO353_23145 0.13 +0.2 5,079,139 + AO353_23145 0.13 +0.1 5,079,139 + AO353_23145 0.13 +0.4 5,079,139 + AO353_23145 0.13 -2.6 5,079,139 + AO353_23145 0.13 +0.1 5,079,140 - AO353_23145 0.13 -0.5 5,079,140 - AO353_23145 0.13 -0.4 5,079,140 - AO353_23145 0.13 -0.4 5,079,140 - AO353_23145 0.13 +0.9 5,079,157 + AO353_23145 0.14 -1.2 5,079,157 + AO353_23145 0.14 +0.3 5,079,157 + AO353_23145 0.14 +0.3 5,079,673 + AO353_23145 0.45 -0.1 5,079,673 + AO353_23145 0.45 -1.1 5,079,674 - AO353_23145 0.45 -0.7 5,079,717 - AO353_23145 0.48 +1.9 5,079,739 + AO353_23145 0.49 +0.1 5,079,739 + AO353_23145 0.49 -0.9 5,079,739 + AO353_23145 0.49 +1.2 5,079,739 + AO353_23145 0.49 +1.0 5,079,739 + AO353_23145 0.49 -0.4 5,079,740 - AO353_23145 0.49 -1.6 5,079,740 - AO353_23145 0.49 -0.3 5,079,740 - AO353_23145 0.49 +0.1 5,079,740 - AO353_23145 0.49 +0.3 5,079,740 - AO353_23145 0.49 -1.2 5,080,249 + AO353_23145 0.79 +0.5 5,080,249 + AO353_23145 0.79 +1.1 5,080,408 + AO353_23145 0.89 +0.4 5,080,408 + AO353_23145 0.89 +1.1 5,080,408 + AO353_23145 0.89 -0.2 5,080,409 - AO353_23145 0.89 -0.0 5,080,409 - AO353_23145 0.89 -0.4 5,080,583 + -0.4 5,080,583 + -0.7 5,080,583 + -0.8 5,080,584 - -0.7 5,080,584 - -0.4 5,080,593 - +0.6 5,080,593 - +0.5 5,080,643 + +1.2 5,080,643 + -0.4 5,081,379 - -0.3 5,081,448 + -1.1 5,081,448 + +0.1 5,081,449 - +0.7 5,081,564 - AO353_23155 0.21 -0.1 5,081,564 - AO353_23155 0.21 -1.2
Or see this region's nucleotide sequence