Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21925

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21920 and AO353_21925 overlap by 4 nucleotidesAO353_21925 and AO353_21930 are separated by 70 nucleotides AO353_21920: AO353_21920 - cytochrome C oxidase Cbb3, at 4,805,383 to 4,806,876 _21920 AO353_21925: AO353_21925 - uroporphyrin-III methyltransferase, at 4,806,873 to 4,807,712 _21925 AO353_21930: AO353_21930 - heme d1 biosynthesis radical SAM protein NirJ, at 4,807,783 to 4,808,961 _21930 Position (kb) 4806 4807 4808Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4805.946 kb on - strand, within AO353_21920at 4806.092 kb on + strand, within AO353_21920at 4806.092 kb on + strand, within AO353_21920at 4806.092 kb on + strand, within AO353_21920at 4806.093 kb on - strand, within AO353_21920at 4806.093 kb on - strand, within AO353_21920at 4806.093 kb on - strand, within AO353_21920at 4806.197 kb on + strand, within AO353_21920at 4806.197 kb on + strand, within AO353_21920at 4806.197 kb on + strand, within AO353_21920at 4806.198 kb on - strand, within AO353_21920at 4806.198 kb on - strand, within AO353_21920at 4806.198 kb on - strand, within AO353_21920at 4806.198 kb on - strand, within AO353_21920at 4806.198 kb on - strand, within AO353_21920at 4806.198 kb on - strand, within AO353_21920at 4806.198 kb on - strand, within AO353_21920at 4806.198 kb on - strand, within AO353_21920at 4806.299 kb on + strand, within AO353_21920at 4806.299 kb on + strand, within AO353_21920at 4806.299 kb on + strand, within AO353_21920at 4806.300 kb on - strand, within AO353_21920at 4806.332 kb on + strand, within AO353_21920at 4806.333 kb on - strand, within AO353_21920at 4806.516 kb on + strand, within AO353_21920at 4806.555 kb on + strand, within AO353_21920at 4806.593 kb on + strand, within AO353_21920at 4806.593 kb on + strand, within AO353_21920at 4806.594 kb on - strand, within AO353_21920at 4806.877 kb on - strandat 4806.877 kb on - strandat 4806.948 kb on - strandat 4807.068 kb on - strand, within AO353_21925at 4807.159 kb on + strand, within AO353_21925at 4807.159 kb on + strand, within AO353_21925at 4807.159 kb on + strand, within AO353_21925at 4807.159 kb on + strand, within AO353_21925at 4807.160 kb on - strand, within AO353_21925at 4807.160 kb on - strand, within AO353_21925at 4807.160 kb on - strand, within AO353_21925at 4807.160 kb on - strandat 4807.291 kb on + strand, within AO353_21925at 4807.291 kb on + strand, within AO353_21925at 4807.299 kb on - strandat 4807.316 kb on + strand, within AO353_21925at 4807.316 kb on + strand, within AO353_21925at 4807.346 kb on + strand, within AO353_21925at 4807.346 kb on + strand, within AO353_21925at 4807.346 kb on + strand, within AO353_21925at 4807.346 kb on + strand, within AO353_21925at 4807.346 kb on + strand, within AO353_21925at 4807.346 kb on + strand, within AO353_21925at 4807.346 kb on + strandat 4807.346 kb on + strand, within AO353_21925at 4807.346 kb on + strand, within AO353_21925at 4807.347 kb on - strand, within AO353_21925at 4807.347 kb on - strand, within AO353_21925at 4807.347 kb on - strand, within AO353_21925at 4807.360 kb on + strand, within AO353_21925at 4807.360 kb on + strand, within AO353_21925at 4807.361 kb on - strand, within AO353_21925at 4807.361 kb on - strand, within AO353_21925at 4807.361 kb on - strand, within AO353_21925at 4807.390 kb on - strand, within AO353_21925at 4807.452 kb on + strand, within AO353_21925at 4807.452 kb on + strand, within AO353_21925at 4807.452 kb on + strand, within AO353_21925at 4807.452 kb on + strand, within AO353_21925at 4807.453 kb on - strand, within AO353_21925at 4807.453 kb on - strand, within AO353_21925at 4807.453 kb on - strand, within AO353_21925at 4807.507 kb on + strand, within AO353_21925at 4807.508 kb on - strand, within AO353_21925at 4807.508 kb on - strand, within AO353_21925at 4807.508 kb on - strand, within AO353_21925at 4807.567 kb on + strand, within AO353_21925at 4807.568 kb on - strand, within AO353_21925at 4807.698 kb on - strandat 4808.057 kb on + strand, within AO353_21930at 4808.057 kb on + strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.071 kb on + strand, within AO353_21930at 4808.071 kb on + strand, within AO353_21930at 4808.071 kb on + strand, within AO353_21930at 4808.072 kb on - strand, within AO353_21930at 4808.072 kb on - strandat 4808.072 kb on - strand, within AO353_21930at 4808.072 kb on - strand, within AO353_21930at 4808.072 kb on - strand, within AO353_21930at 4808.072 kb on - strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.157 kb on - strand, within AO353_21930at 4808.168 kb on - strand, within AO353_21930at 4808.168 kb on - strand, within AO353_21930at 4808.168 kb on - strand, within AO353_21930at 4808.168 kb on - strand, within AO353_21930at 4808.348 kb on + strand, within AO353_21930at 4808.348 kb on + strand, within AO353_21930at 4808.348 kb on + strand, within AO353_21930at 4808.349 kb on - strand, within AO353_21930at 4808.366 kb on + strand, within AO353_21930at 4808.367 kb on - strand, within AO353_21930at 4808.384 kb on + strand, within AO353_21930at 4808.573 kb on + strand, within AO353_21930at 4808.574 kb on - strand, within AO353_21930at 4808.574 kb on - strand, within AO353_21930at 4808.669 kb on + strand, within AO353_21930at 4808.669 kb on + strand, within AO353_21930at 4808.670 kb on - strand, within AO353_21930

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,805,946 - AO353_21920 0.38 +0.6
4,806,092 + AO353_21920 0.47 -1.7
4,806,092 + AO353_21920 0.47 +0.4
4,806,092 + AO353_21920 0.47 +0.0
4,806,093 - AO353_21920 0.48 -0.3
4,806,093 - AO353_21920 0.48 -1.0
4,806,093 - AO353_21920 0.48 -0.9
4,806,197 + AO353_21920 0.54 +2.0
4,806,197 + AO353_21920 0.54 -1.3
4,806,197 + AO353_21920 0.54 +1.0
4,806,198 - AO353_21920 0.55 -0.3
4,806,198 - AO353_21920 0.55 -0.7
4,806,198 - AO353_21920 0.55 -0.9
4,806,198 - AO353_21920 0.55 +0.4
4,806,198 - AO353_21920 0.55 +0.3
4,806,198 - AO353_21920 0.55 -1.1
4,806,198 - AO353_21920 0.55 -0.3
4,806,198 - AO353_21920 0.55 -1.1
4,806,299 + AO353_21920 0.61 -0.4
4,806,299 + AO353_21920 0.61 -0.7
4,806,299 + AO353_21920 0.61 +0.8
4,806,300 - AO353_21920 0.61 +0.1
4,806,332 + AO353_21920 0.64 +0.3
4,806,333 - AO353_21920 0.64 -1.3
4,806,516 + AO353_21920 0.76 -0.4
4,806,555 + AO353_21920 0.78 +0.6
4,806,593 + AO353_21920 0.81 +0.0
4,806,593 + AO353_21920 0.81 -0.6
4,806,594 - AO353_21920 0.81 +0.2
4,806,877 - +0.3
4,806,877 - +0.1
4,806,948 - -0.4
4,807,068 - AO353_21925 0.23 -0.1
4,807,159 + AO353_21925 0.34 -0.1
4,807,159 + AO353_21925 0.34 -0.8
4,807,159 + AO353_21925 0.34 +0.7
4,807,159 + AO353_21925 0.34 -0.8
4,807,160 - AO353_21925 0.34 +1.0
4,807,160 - AO353_21925 0.34 -0.6
4,807,160 - AO353_21925 0.34 -0.1
4,807,160 - +0.0
4,807,291 + AO353_21925 0.50 -2.1
4,807,291 + AO353_21925 0.50 +1.0
4,807,299 - -0.6
4,807,316 + AO353_21925 0.53 -1.6
4,807,316 + AO353_21925 0.53 +0.1
4,807,346 + AO353_21925 0.56 +0.2
4,807,346 + AO353_21925 0.56 +0.0
4,807,346 + AO353_21925 0.56 -0.6
4,807,346 + AO353_21925 0.56 +0.8
4,807,346 + AO353_21925 0.56 +0.2
4,807,346 + AO353_21925 0.56 -0.5
4,807,346 + +1.6
4,807,346 + AO353_21925 0.56 +0.0
4,807,346 + AO353_21925 0.56 +1.4
4,807,347 - AO353_21925 0.56 -1.4
4,807,347 - AO353_21925 0.56 +0.3
4,807,347 - AO353_21925 0.56 +0.9
4,807,360 + AO353_21925 0.58 +0.2
4,807,360 + AO353_21925 0.58 -0.9
4,807,361 - AO353_21925 0.58 +1.0
4,807,361 - AO353_21925 0.58 -0.4
4,807,361 - AO353_21925 0.58 -0.8
4,807,390 - AO353_21925 0.62 -0.3
4,807,452 + AO353_21925 0.69 -0.7
4,807,452 + AO353_21925 0.69 +0.5
4,807,452 + AO353_21925 0.69 +0.0
4,807,452 + AO353_21925 0.69 -1.4
4,807,453 - AO353_21925 0.69 -0.9
4,807,453 - AO353_21925 0.69 -0.2
4,807,453 - AO353_21925 0.69 +0.4
4,807,507 + AO353_21925 0.75 -0.7
4,807,508 - AO353_21925 0.76 -2.3
4,807,508 - AO353_21925 0.76 +1.4
4,807,508 - AO353_21925 0.76 -0.2
4,807,567 + AO353_21925 0.83 +0.0
4,807,568 - AO353_21925 0.83 +1.0
4,807,698 - -0.1
4,808,057 + AO353_21930 0.23 +0.4
4,808,057 + AO353_21930 0.23 -0.1
4,808,058 - AO353_21930 0.23 +0.2
4,808,058 - AO353_21930 0.23 -0.3
4,808,058 - AO353_21930 0.23 -2.0
4,808,058 - AO353_21930 0.23 +0.8
4,808,058 - AO353_21930 0.23 -1.0
4,808,058 - AO353_21930 0.23 +1.0
4,808,058 - AO353_21930 0.23 +3.0
4,808,058 - AO353_21930 0.23 +0.4
4,808,058 - AO353_21930 0.23 -0.6
4,808,058 - AO353_21930 0.23 +0.2
4,808,071 + AO353_21930 0.24 +0.8
4,808,071 + AO353_21930 0.24 -1.4
4,808,071 + AO353_21930 0.24 +0.3
4,808,072 - AO353_21930 0.25 +0.0
4,808,072 - -0.6
4,808,072 - AO353_21930 0.25 +0.8
4,808,072 - AO353_21930 0.25 +0.3
4,808,072 - AO353_21930 0.25 +0.6
4,808,072 - AO353_21930 0.25 +0.7
4,808,139 + AO353_21930 0.30 -0.4
4,808,139 + AO353_21930 0.30 -0.6
4,808,139 + AO353_21930 0.30 +0.0
4,808,139 + AO353_21930 0.30 -1.8
4,808,139 + AO353_21930 0.30 +0.6
4,808,139 + AO353_21930 0.30 -1.0
4,808,139 + AO353_21930 0.30 -0.2
4,808,139 + AO353_21930 0.30 +0.6
4,808,139 + AO353_21930 0.30 -0.3
4,808,139 + AO353_21930 0.30 +0.3
4,808,140 - AO353_21930 0.30 +2.2
4,808,140 - AO353_21930 0.30 -0.0
4,808,140 - AO353_21930 0.30 +0.2
4,808,140 - AO353_21930 0.30 -1.2
4,808,140 - AO353_21930 0.30 -0.8
4,808,140 - AO353_21930 0.30 +0.6
4,808,140 - AO353_21930 0.30 -0.6
4,808,140 - AO353_21930 0.30 +0.2
4,808,140 - AO353_21930 0.30 +1.0
4,808,140 - AO353_21930 0.30 +1.2
4,808,140 - AO353_21930 0.30 +0.5
4,808,157 - AO353_21930 0.32 +0.1
4,808,168 - AO353_21930 0.33 +0.4
4,808,168 - AO353_21930 0.33 -0.2
4,808,168 - AO353_21930 0.33 -1.1
4,808,168 - AO353_21930 0.33 -0.6
4,808,348 + AO353_21930 0.48 -1.1
4,808,348 + AO353_21930 0.48 +0.3
4,808,348 + AO353_21930 0.48 +0.3
4,808,349 - AO353_21930 0.48 +1.1
4,808,366 + AO353_21930 0.49 +1.3
4,808,367 - AO353_21930 0.50 -0.4
4,808,384 + AO353_21930 0.51 -2.6
4,808,573 + AO353_21930 0.67 -0.9
4,808,574 - AO353_21930 0.67 +0.6
4,808,574 - AO353_21930 0.67 -1.4
4,808,669 + AO353_21930 0.75 -0.5
4,808,669 + AO353_21930 0.75 +0.3
4,808,670 - AO353_21930 0.75 -0.6

Or see this region's nucleotide sequence