Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17670

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17660 and AO353_17665 are separated by 10 nucleotidesAO353_17665 and AO353_17670 are separated by 329 nucleotidesAO353_17670 and AO353_17675 are separated by 17 nucleotides AO353_17660: AO353_17660 - peroxiredoxin, at 3,892,186 to 3,892,659 _17660 AO353_17665: AO353_17665 - glycine cleavage system protein R, at 3,892,670 to 3,893,230 _17665 AO353_17670: AO353_17670 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,893,560 to 3,894,438 _17670 AO353_17675: AO353_17675 - hypothetical protein, at 3,894,456 to 3,895,571 _17675 Position (kb) 3893 3894 3895Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3892.647 kb on + strandat 3892.671 kb on + strandat 3892.671 kb on + strandat 3892.671 kb on + strandat 3892.671 kb on + strandat 3892.671 kb on + strandat 3892.671 kb on + strandat 3892.671 kb on + strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.672 kb on - strandat 3892.789 kb on + strand, within AO353_17665at 3892.790 kb on - strand, within AO353_17665at 3892.833 kb on + strand, within AO353_17665at 3892.833 kb on + strand, within AO353_17665at 3892.833 kb on + strand, within AO353_17665at 3892.833 kb on + strand, within AO353_17665at 3892.834 kb on - strand, within AO353_17665at 3892.834 kb on - strand, within AO353_17665at 3892.834 kb on - strand, within AO353_17665at 3892.834 kb on - strand, within AO353_17665at 3892.834 kb on - strand, within AO353_17665at 3892.834 kb on - strand, within AO353_17665at 3892.834 kb on - strand, within AO353_17665at 3892.834 kb on - strand, within AO353_17665at 3892.834 kb on - strand, within AO353_17665at 3892.929 kb on + strand, within AO353_17665at 3892.929 kb on + strand, within AO353_17665at 3892.929 kb on + strand, within AO353_17665at 3892.930 kb on - strand, within AO353_17665at 3892.930 kb on - strand, within AO353_17665at 3892.930 kb on - strand, within AO353_17665at 3892.930 kb on - strand, within AO353_17665at 3892.930 kb on - strand, within AO353_17665at 3892.930 kb on - strand, within AO353_17665at 3892.930 kb on - strand, within AO353_17665at 3892.930 kb on - strand, within AO353_17665at 3892.930 kb on - strand, within AO353_17665at 3892.939 kb on - strand, within AO353_17665at 3892.939 kb on - strand, within AO353_17665at 3892.939 kb on - strand, within AO353_17665at 3892.939 kb on - strandat 3892.939 kb on - strand, within AO353_17665at 3892.939 kb on - strand, within AO353_17665at 3893.241 kb on + strandat 3893.242 kb on - strandat 3893.260 kb on + strandat 3893.260 kb on + strandat 3893.261 kb on - strandat 3893.261 kb on - strandat 3893.261 kb on - strandat 3893.264 kb on + strandat 3893.264 kb on + strandat 3893.264 kb on + strandat 3893.264 kb on + strandat 3893.264 kb on + strandat 3893.264 kb on + strandat 3893.264 kb on + strandat 3893.264 kb on + strandat 3893.264 kb on + strandat 3893.264 kb on + strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.265 kb on - strandat 3893.417 kb on + strandat 3893.491 kb on + strandat 3893.491 kb on + strandat 3893.492 kb on - strandat 3893.492 kb on - strandat 3894.428 kb on + strandat 3894.428 kb on + strandat 3894.448 kb on + strandat 3894.448 kb on + strandat 3894.449 kb on - strandat 3894.494 kb on + strandat 3894.564 kb on + strandat 3894.564 kb on + strandat 3894.614 kb on + strand, within AO353_17675at 3894.614 kb on + strand, within AO353_17675at 3894.684 kb on + strand, within AO353_17675at 3894.735 kb on + strand, within AO353_17675at 3895.011 kb on + strand, within AO353_17675at 3895.011 kb on + strand, within AO353_17675at 3895.011 kb on + strand, within AO353_17675at 3895.012 kb on - strand, within AO353_17675at 3895.012 kb on - strand, within AO353_17675at 3895.332 kb on + strand, within AO353_17675at 3895.332 kb on + strand, within AO353_17675at 3895.332 kb on + strand, within AO353_17675at 3895.332 kb on + strand, within AO353_17675at 3895.333 kb on - strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,892,647 + +0.1
3,892,671 + -0.1
3,892,671 + -0.4
3,892,671 + +0.0
3,892,671 + +0.5
3,892,671 + -0.2
3,892,671 + +0.1
3,892,671 + +2.2
3,892,672 - -0.9
3,892,672 - -0.7
3,892,672 - -0.3
3,892,672 - +0.3
3,892,672 - -0.0
3,892,672 - -0.6
3,892,672 - -0.5
3,892,672 - +0.2
3,892,672 - +1.0
3,892,672 - +1.2
3,892,672 - +0.0
3,892,672 - -0.4
3,892,789 + AO353_17665 0.21 -0.1
3,892,790 - AO353_17665 0.21 +0.5
3,892,833 + AO353_17665 0.29 +0.2
3,892,833 + AO353_17665 0.29 -0.1
3,892,833 + AO353_17665 0.29 -0.3
3,892,833 + AO353_17665 0.29 -0.1
3,892,834 - AO353_17665 0.29 -0.6
3,892,834 - AO353_17665 0.29 -1.7
3,892,834 - AO353_17665 0.29 -0.2
3,892,834 - AO353_17665 0.29 -0.4
3,892,834 - AO353_17665 0.29 +0.3
3,892,834 - AO353_17665 0.29 -0.5
3,892,834 - AO353_17665 0.29 +0.1
3,892,834 - AO353_17665 0.29 -0.1
3,892,834 - AO353_17665 0.29 +0.9
3,892,929 + AO353_17665 0.46 -0.4
3,892,929 + AO353_17665 0.46 -0.5
3,892,929 + AO353_17665 0.46 +0.7
3,892,930 - AO353_17665 0.46 +0.3
3,892,930 - AO353_17665 0.46 +0.9
3,892,930 - AO353_17665 0.46 +0.5
3,892,930 - AO353_17665 0.46 +1.0
3,892,930 - AO353_17665 0.46 +0.0
3,892,930 - AO353_17665 0.46 +0.0
3,892,930 - AO353_17665 0.46 -1.0
3,892,930 - AO353_17665 0.46 -0.4
3,892,930 - AO353_17665 0.46 -0.1
3,892,939 - AO353_17665 0.48 +1.1
3,892,939 - AO353_17665 0.48 +0.2
3,892,939 - AO353_17665 0.48 +0.3
3,892,939 - +0.8
3,892,939 - AO353_17665 0.48 -0.2
3,892,939 - AO353_17665 0.48 +0.1
3,893,241 + -0.4
3,893,242 - -0.7
3,893,260 + -0.0
3,893,260 + +0.3
3,893,261 - +0.1
3,893,261 - -0.0
3,893,261 - -0.9
3,893,264 + +0.7
3,893,264 + -1.0
3,893,264 + +0.2
3,893,264 + -0.6
3,893,264 + -0.6
3,893,264 + -0.7
3,893,264 + +1.1
3,893,264 + +0.2
3,893,264 + +0.6
3,893,264 + +0.5
3,893,265 - -0.2
3,893,265 - +1.3
3,893,265 - -0.9
3,893,265 - -0.8
3,893,265 - -0.2
3,893,265 - +0.3
3,893,265 - -0.8
3,893,265 - -0.5
3,893,265 - -0.8
3,893,265 - -0.1
3,893,265 - -0.5
3,893,417 + -1.1
3,893,491 + +0.5
3,893,491 + -0.1
3,893,492 - -0.8
3,893,492 - -1.0
3,894,428 + -0.7
3,894,428 + +0.2
3,894,448 + -0.1
3,894,448 + +0.1
3,894,449 - -2.8
3,894,494 + -1.3
3,894,564 + -1.2
3,894,564 + -1.3
3,894,614 + AO353_17675 0.14 +0.9
3,894,614 + AO353_17675 0.14 +0.5
3,894,684 + AO353_17675 0.20 -1.2
3,894,735 + AO353_17675 0.25 +0.3
3,895,011 + AO353_17675 0.50 -2.0
3,895,011 + AO353_17675 0.50 +0.0
3,895,011 + AO353_17675 0.50 -0.8
3,895,012 - AO353_17675 0.50 -1.7
3,895,012 - AO353_17675 0.50 -1.7
3,895,332 + AO353_17675 0.78 -1.7
3,895,332 + AO353_17675 0.78 -1.0
3,895,332 + AO353_17675 0.78 -0.7
3,895,332 + AO353_17675 0.78 -0.1
3,895,333 - AO353_17675 0.79 -1.4
3,895,335 + AO353_17675 0.79 -0.0
3,895,335 + AO353_17675 0.79 +0.0
3,895,335 + AO353_17675 0.79 +0.0
3,895,335 + AO353_17675 0.79 -0.7
3,895,335 + AO353_17675 0.79 -1.8
3,895,335 + AO353_17675 0.79 +0.8
3,895,335 + AO353_17675 0.79 -0.2
3,895,335 + AO353_17675 0.79 +0.7

Or see this region's nucleotide sequence