Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16435

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16430 and AO353_16435 are separated by 137 nucleotidesAO353_16435 and AO353_16440 are separated by 33 nucleotidesAO353_16440 and AO353_16445 are separated by 224 nucleotides AO353_16430: AO353_16430 - cysteine sulfinate desulfinase, at 3,647,624 to 3,648,829 _16430 AO353_16435: AO353_16435 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 3,648,967 to 3,650,001 _16435 AO353_16440: AO353_16440 - ArsC family transcriptional regulator, at 3,650,035 to 3,650,397 _16440 AO353_16445: AO353_16445 - succinyldiaminopimelate transaminase, at 3,650,622 to 3,651,821 _16445 Position (kb) 3648 3649 3650 3651Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3648.057 kb on + strand, within AO353_16430at 3648.057 kb on + strand, within AO353_16430at 3648.058 kb on - strand, within AO353_16430at 3648.058 kb on - strand, within AO353_16430at 3648.058 kb on - strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.130 kb on - strand, within AO353_16430at 3648.130 kb on - strand, within AO353_16430at 3648.130 kb on - strand, within AO353_16430at 3648.130 kb on - strand, within AO353_16430at 3648.156 kb on + strand, within AO353_16430at 3648.157 kb on - strand, within AO353_16430at 3648.157 kb on - strand, within AO353_16430at 3648.180 kb on + strand, within AO353_16430at 3648.181 kb on - strand, within AO353_16430at 3648.528 kb on + strand, within AO353_16430at 3648.528 kb on + strand, within AO353_16430at 3648.696 kb on + strand, within AO353_16430at 3648.696 kb on + strand, within AO353_16430at 3648.697 kb on - strand, within AO353_16430at 3648.697 kb on - strand, within AO353_16430at 3648.697 kb on - strand, within AO353_16430at 3648.699 kb on + strand, within AO353_16430at 3648.699 kb on + strand, within AO353_16430at 3648.699 kb on + strand, within AO353_16430at 3648.699 kb on + strand, within AO353_16430at 3648.699 kb on + strand, within AO353_16430at 3648.699 kb on + strand, within AO353_16430at 3648.699 kb on + strand, within AO353_16430at 3648.700 kb on - strand, within AO353_16430at 3648.759 kb on + strandat 3648.759 kb on + strandat 3648.759 kb on + strandat 3648.760 kb on - strandat 3648.760 kb on - strandat 3648.845 kb on + strandat 3648.845 kb on + strandat 3648.846 kb on - strandat 3648.861 kb on + strandat 3648.861 kb on + strandat 3648.861 kb on + strandat 3648.861 kb on + strandat 3648.861 kb on + strandat 3648.861 kb on + strandat 3648.862 kb on - strandat 3648.862 kb on - strandat 3648.862 kb on - strandat 3648.862 kb on - strandat 3648.862 kb on - strandat 3648.862 kb on - strandat 3648.875 kb on + strandat 3648.876 kb on - strandat 3648.876 kb on - strandat 3648.968 kb on + strandat 3648.968 kb on + strandat 3648.968 kb on + strandat 3648.968 kb on + strandat 3648.968 kb on + strandat 3648.968 kb on + strandat 3648.968 kb on + strandat 3648.968 kb on + strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3648.969 kb on - strandat 3650.014 kb on - strandat 3650.036 kb on + strandat 3650.037 kb on - strandat 3650.037 kb on - strandat 3650.037 kb on - strandat 3650.037 kb on - strandat 3650.055 kb on - strandat 3650.055 kb on - strandat 3650.145 kb on + strand, within AO353_16440at 3650.172 kb on + strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.443 kb on + strandat 3650.443 kb on + strandat 3650.443 kb on + strandat 3650.443 kb on + strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.523 kb on + strandat 3650.523 kb on + strandat 3650.523 kb on + strandat 3650.524 kb on - strandat 3650.616 kb on + strandat 3650.616 kb on + strandat 3650.616 kb on + strandat 3650.616 kb on + strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.623 kb on + strandat 3650.623 kb on + strandat 3650.749 kb on + strand, within AO353_16445at 3650.749 kb on + strand, within AO353_16445at 3650.750 kb on - strand, within AO353_16445at 3650.750 kb on - strand, within AO353_16445at 3650.750 kb on - strand, within AO353_16445at 3650.836 kb on + strand, within AO353_16445at 3650.836 kb on + strand, within AO353_16445at 3650.837 kb on - strand, within AO353_16445at 3650.837 kb on - strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.860 kb on - strand, within AO353_16445at 3650.860 kb on - strand, within AO353_16445at 3650.860 kb on - strand, within AO353_16445at 3650.899 kb on + strand, within AO353_16445at 3650.899 kb on + strand, within AO353_16445at 3650.899 kb on + strand, within AO353_16445at 3650.899 kb on + strand, within AO353_16445at 3650.900 kb on - strand, within AO353_16445at 3650.900 kb on - strand, within AO353_16445at 3650.900 kb on - strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,648,057 + AO353_16430 0.36 +1.1
3,648,057 + AO353_16430 0.36 -1.2
3,648,058 - AO353_16430 0.36 +1.8
3,648,058 - AO353_16430 0.36 -0.5
3,648,058 - AO353_16430 0.36 +0.9
3,648,129 + AO353_16430 0.42 +0.6
3,648,129 + AO353_16430 0.42 +0.5
3,648,129 + AO353_16430 0.42 -1.0
3,648,129 + AO353_16430 0.42 +1.3
3,648,129 + AO353_16430 0.42 +0.5
3,648,130 - AO353_16430 0.42 +1.2
3,648,130 - AO353_16430 0.42 +0.3
3,648,130 - AO353_16430 0.42 +0.1
3,648,130 - AO353_16430 0.42 +0.4
3,648,156 + AO353_16430 0.44 +0.1
3,648,157 - AO353_16430 0.44 -0.7
3,648,157 - AO353_16430 0.44 +0.5
3,648,180 + AO353_16430 0.46 -0.0
3,648,181 - AO353_16430 0.46 -0.4
3,648,528 + AO353_16430 0.75 -0.4
3,648,528 + AO353_16430 0.75 -0.4
3,648,696 + AO353_16430 0.89 -1.0
3,648,696 + AO353_16430 0.89 -0.5
3,648,697 - AO353_16430 0.89 -1.3
3,648,697 - AO353_16430 0.89 -0.5
3,648,697 - AO353_16430 0.89 +0.5
3,648,699 + AO353_16430 0.89 -0.1
3,648,699 + AO353_16430 0.89 -0.8
3,648,699 + AO353_16430 0.89 +1.1
3,648,699 + AO353_16430 0.89 -0.1
3,648,699 + AO353_16430 0.89 -0.3
3,648,699 + AO353_16430 0.89 +0.6
3,648,699 + AO353_16430 0.89 -0.5
3,648,700 - AO353_16430 0.89 +0.1
3,648,759 + -0.5
3,648,759 + +3.0
3,648,759 + -0.5
3,648,760 - -1.4
3,648,760 - -2.1
3,648,845 + -0.1
3,648,845 + -0.4
3,648,846 - -0.7
3,648,861 + -0.1
3,648,861 + +1.6
3,648,861 + -1.2
3,648,861 + -1.0
3,648,861 + -0.5
3,648,861 + -1.1
3,648,862 - -1.0
3,648,862 - +0.7
3,648,862 - -0.1
3,648,862 - -0.3
3,648,862 - -0.5
3,648,862 - -0.5
3,648,875 + -0.3
3,648,876 - -0.4
3,648,876 - -2.1
3,648,968 + -0.9
3,648,968 + -1.4
3,648,968 + +0.5
3,648,968 + +0.7
3,648,968 + -0.0
3,648,968 + -0.4
3,648,968 + +0.1
3,648,968 + +1.0
3,648,969 - -0.5
3,648,969 - +0.1
3,648,969 - +0.8
3,648,969 - +0.3
3,648,969 - +0.2
3,648,969 - -0.5
3,648,969 - -1.1
3,648,969 - +0.4
3,648,969 - -1.5
3,648,969 - -0.5
3,648,969 - +0.5
3,648,969 - -1.2
3,650,014 - +0.8
3,650,036 + -1.4
3,650,037 - +0.9
3,650,037 - +0.6
3,650,037 - -1.1
3,650,037 - -0.3
3,650,055 - +1.5
3,650,055 - -0.2
3,650,145 + AO353_16440 0.30 -1.5
3,650,172 + AO353_16440 0.38 -2.0
3,650,173 - AO353_16440 0.38 -0.2
3,650,173 - AO353_16440 0.38 +0.7
3,650,173 - AO353_16440 0.38 -2.7
3,650,173 - AO353_16440 0.38 +0.5
3,650,173 - AO353_16440 0.38 -1.6
3,650,443 + -0.9
3,650,443 + -2.1
3,650,443 + -2.4
3,650,443 + -1.8
3,650,444 - +0.7
3,650,444 - -1.9
3,650,444 - +1.5
3,650,444 - -0.3
3,650,444 - +0.8
3,650,444 - -0.1
3,650,523 + -1.5
3,650,523 + -1.9
3,650,523 + -0.1
3,650,524 - -1.9
3,650,616 + +0.4
3,650,616 + +0.0
3,650,616 + +1.5
3,650,616 + +0.0
3,650,617 - -0.1
3,650,617 - +1.5
3,650,617 - -0.4
3,650,617 - +0.5
3,650,617 - +0.9
3,650,617 - +0.6
3,650,623 + +0.1
3,650,623 + +0.6
3,650,749 + AO353_16445 0.11 +0.5
3,650,749 + AO353_16445 0.11 -0.3
3,650,750 - AO353_16445 0.11 -0.2
3,650,750 - AO353_16445 0.11 +0.7
3,650,750 - AO353_16445 0.11 -0.3
3,650,836 + AO353_16445 0.18 +0.5
3,650,836 + AO353_16445 0.18 +0.0
3,650,837 - AO353_16445 0.18 +0.4
3,650,837 - AO353_16445 0.18 -0.1
3,650,859 + AO353_16445 0.20 -0.1
3,650,859 + AO353_16445 0.20 -0.4
3,650,859 + AO353_16445 0.20 -1.1
3,650,859 + AO353_16445 0.20 -0.3
3,650,859 + AO353_16445 0.20 -0.4
3,650,859 + AO353_16445 0.20 -0.6
3,650,859 + AO353_16445 0.20 -1.4
3,650,859 + AO353_16445 0.20 -0.5
3,650,860 - AO353_16445 0.20 -0.5
3,650,860 - AO353_16445 0.20 -0.5
3,650,860 - AO353_16445 0.20 -2.0
3,650,899 + AO353_16445 0.23 +0.2
3,650,899 + AO353_16445 0.23 -0.1
3,650,899 + AO353_16445 0.23 -0.5
3,650,899 + AO353_16445 0.23 +1.1
3,650,900 - AO353_16445 0.23 +1.2
3,650,900 - AO353_16445 0.23 -1.2
3,650,900 - AO353_16445 0.23 -2.6
3,651,001 + AO353_16445 0.32 -0.2
3,651,001 + AO353_16445 0.32 +0.1
3,651,001 + AO353_16445 0.32 -2.4
3,651,001 + AO353_16445 0.32 +0.2
3,651,001 + AO353_16445 0.32 -0.9
3,651,001 + AO353_16445 0.32 +0.5
3,651,001 + AO353_16445 0.32 -0.4
3,651,001 + AO353_16445 0.32 +0.3

Or see this region's nucleotide sequence