Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10500

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10495 and AO353_10500 are separated by 36 nucleotidesAO353_10500 and AO353_10505 are separated by 53 nucleotidesAO353_10505 and AO353_10510 overlap by 1 nucleotides AO353_10495: AO353_10495 - serine hydroxymethyltransferase, at 2,302,140 to 2,303,405 _10495 AO353_10500: AO353_10500 - acetylornithine aminotransferase, at 2,303,442 to 2,304,614 _10500 AO353_10505: AO353_10505 - hypothetical protein, at 2,304,668 to 2,305,486 _10505 AO353_10510: AO353_10510 - benzoate transporter, at 2,305,486 to 2,306,736 _10510 Position (kb) 2303 2304 2305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2302.544 kb on - strand, within AO353_10495at 2302.733 kb on + strand, within AO353_10495at 2302.733 kb on + strand, within AO353_10495at 2302.873 kb on + strand, within AO353_10495at 2302.907 kb on + strand, within AO353_10495at 2302.987 kb on + strand, within AO353_10495at 2302.987 kb on + strand, within AO353_10495at 2302.987 kb on + strand, within AO353_10495at 2302.987 kb on + strand, within AO353_10495at 2302.987 kb on + strand, within AO353_10495at 2302.988 kb on - strand, within AO353_10495at 2302.988 kb on - strand, within AO353_10495at 2303.198 kb on - strand, within AO353_10495at 2303.213 kb on - strand, within AO353_10495at 2303.242 kb on + strand, within AO353_10495at 2303.293 kb on + strandat 2303.345 kb on + strandat 2303.345 kb on + strandat 2303.401 kb on + strandat 2303.401 kb on + strandat 2303.402 kb on - strandat 2303.433 kb on + strandat 2303.434 kb on - strandat 2303.434 kb on - strandat 2303.434 kb on - strandat 2303.434 kb on - strandat 2303.434 kb on - strandat 2303.443 kb on + strandat 2303.443 kb on + strandat 2303.544 kb on + strandat 2303.545 kb on - strandat 2303.545 kb on - strandat 2303.545 kb on - strandat 2303.545 kb on - strandat 2303.545 kb on - strandat 2303.550 kb on + strandat 2303.551 kb on - strandat 2303.551 kb on - strandat 2303.551 kb on - strandat 2303.746 kb on - strand, within AO353_10500at 2304.012 kb on + strand, within AO353_10500at 2304.012 kb on + strand, within AO353_10500at 2304.012 kb on + strand, within AO353_10500at 2304.012 kb on + strand, within AO353_10500at 2304.012 kb on + strand, within AO353_10500at 2304.012 kb on + strand, within AO353_10500at 2304.013 kb on - strand, within AO353_10500at 2304.013 kb on - strand, within AO353_10500at 2304.013 kb on - strand, within AO353_10500at 2304.013 kb on - strand, within AO353_10500at 2304.128 kb on - strand, within AO353_10500at 2304.128 kb on - strand, within AO353_10500at 2304.138 kb on + strand, within AO353_10500at 2304.139 kb on - strand, within AO353_10500at 2304.174 kb on + strand, within AO353_10500at 2304.511 kb on + strandat 2304.512 kb on - strandat 2304.512 kb on - strandat 2304.512 kb on - strandat 2304.512 kb on - strandat 2304.512 kb on - strandat 2304.580 kb on + strandat 2304.580 kb on + strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.581 kb on - strandat 2304.596 kb on - strandat 2304.596 kb on - strandat 2304.596 kb on - strandat 2304.596 kb on - strandat 2304.630 kb on - strandat 2304.649 kb on + strandat 2304.649 kb on + strandat 2304.649 kb on + strandat 2304.649 kb on + strandat 2304.649 kb on + strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.650 kb on - strandat 2304.670 kb on - strandat 2304.709 kb on - strandat 2304.709 kb on - strandat 2304.709 kb on - strandat 2304.709 kb on - strandat 2304.709 kb on - strandat 2304.711 kb on + strandat 2304.712 kb on - strandat 2304.712 kb on - strandat 2304.712 kb on - strandat 2304.712 kb on - strandat 2304.881 kb on + strand, within AO353_10505at 2304.882 kb on - strand, within AO353_10505at 2304.882 kb on - strand, within AO353_10505at 2304.882 kb on - strand, within AO353_10505at 2304.976 kb on - strand, within AO353_10505at 2304.976 kb on - strand, within AO353_10505at 2305.012 kb on - strand, within AO353_10505at 2305.012 kb on - strand, within AO353_10505at 2305.033 kb on + strand, within AO353_10505at 2305.034 kb on - strand, within AO353_10505at 2305.034 kb on - strand, within AO353_10505at 2305.034 kb on - strand, within AO353_10505at 2305.260 kb on - strand, within AO353_10505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,302,544 - AO353_10495 0.32 -1.4
2,302,733 + AO353_10495 0.47 -2.2
2,302,733 + AO353_10495 0.47 +0.1
2,302,873 + AO353_10495 0.58 +0.9
2,302,907 + AO353_10495 0.61 -0.4
2,302,987 + AO353_10495 0.67 -0.1
2,302,987 + AO353_10495 0.67 -1.9
2,302,987 + AO353_10495 0.67 +0.9
2,302,987 + AO353_10495 0.67 -1.1
2,302,987 + AO353_10495 0.67 -1.2
2,302,988 - AO353_10495 0.67 -2.4
2,302,988 - AO353_10495 0.67 -0.9
2,303,198 - AO353_10495 0.84 +0.9
2,303,213 - AO353_10495 0.85 +1.1
2,303,242 + AO353_10495 0.87 -0.7
2,303,293 + +0.6
2,303,345 + -1.0
2,303,345 + -1.4
2,303,401 + -1.6
2,303,401 + -0.4
2,303,402 - +0.1
2,303,433 + -0.1
2,303,434 - -0.6
2,303,434 - -0.6
2,303,434 - -0.3
2,303,434 - +0.2
2,303,434 - -1.4
2,303,443 + +1.6
2,303,443 + -1.0
2,303,544 + -1.3
2,303,545 - +0.8
2,303,545 - +0.3
2,303,545 - -1.2
2,303,545 - -0.6
2,303,545 - -1.6
2,303,550 + +0.0
2,303,551 - -0.4
2,303,551 - -2.2
2,303,551 - -0.7
2,303,746 - AO353_10500 0.26 -0.3
2,304,012 + AO353_10500 0.49 -0.7
2,304,012 + AO353_10500 0.49 +1.3
2,304,012 + AO353_10500 0.49 -0.9
2,304,012 + AO353_10500 0.49 -0.4
2,304,012 + AO353_10500 0.49 -0.4
2,304,012 + AO353_10500 0.49 -0.9
2,304,013 - AO353_10500 0.49 +2.5
2,304,013 - AO353_10500 0.49 -1.9
2,304,013 - AO353_10500 0.49 +0.6
2,304,013 - AO353_10500 0.49 -2.2
2,304,128 - AO353_10500 0.58 -2.4
2,304,128 - AO353_10500 0.58 +0.3
2,304,138 + AO353_10500 0.59 +0.4
2,304,139 - AO353_10500 0.59 -1.6
2,304,174 + AO353_10500 0.62 -0.1
2,304,511 + -1.3
2,304,512 - -2.0
2,304,512 - -2.2
2,304,512 - -2.2
2,304,512 - +0.4
2,304,512 - +0.7
2,304,580 + -0.9
2,304,580 + -2.2
2,304,581 - +0.5
2,304,581 - -0.8
2,304,581 - -1.4
2,304,581 - -1.1
2,304,581 - -1.8
2,304,581 - -0.0
2,304,581 - -0.7
2,304,581 - +0.9
2,304,581 - +0.1
2,304,581 - -0.9
2,304,581 - -0.1
2,304,581 - -2.8
2,304,581 - -0.1
2,304,581 - -0.3
2,304,581 - +0.1
2,304,581 - -0.7
2,304,581 - -2.4
2,304,581 - -1.9
2,304,596 - -0.2
2,304,596 - -0.3
2,304,596 - -0.3
2,304,596 - +0.1
2,304,630 - -1.0
2,304,649 + -0.7
2,304,649 + -0.1
2,304,649 + -0.7
2,304,649 + -0.6
2,304,649 + -1.4
2,304,650 - -0.7
2,304,650 - +0.1
2,304,650 - -0.7
2,304,650 - +0.4
2,304,650 - +1.5
2,304,650 - -1.4
2,304,650 - -0.6
2,304,650 - -0.4
2,304,650 - +0.5
2,304,650 - -0.4
2,304,650 - +1.0
2,304,650 - +0.3
2,304,650 - +1.2
2,304,650 - +0.7
2,304,650 - -0.1
2,304,670 - -0.9
2,304,709 - +0.6
2,304,709 - -0.9
2,304,709 - -1.1
2,304,709 - -0.5
2,304,709 - +0.4
2,304,711 + -2.3
2,304,712 - -0.1
2,304,712 - +0.2
2,304,712 - +0.8
2,304,712 - -0.7
2,304,881 + AO353_10505 0.26 +1.3
2,304,882 - AO353_10505 0.26 +0.1
2,304,882 - AO353_10505 0.26 -2.3
2,304,882 - AO353_10505 0.26 +0.4
2,304,976 - AO353_10505 0.38 -1.8
2,304,976 - AO353_10505 0.38 +1.7
2,305,012 - AO353_10505 0.42 -0.9
2,305,012 - AO353_10505 0.42 -1.2
2,305,033 + AO353_10505 0.45 -0.1
2,305,034 - AO353_10505 0.45 -0.1
2,305,034 - AO353_10505 0.45 +0.1
2,305,034 - AO353_10505 0.45 +0.6
2,305,260 - AO353_10505 0.72 -0.9

Or see this region's nucleotide sequence