Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09035

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09030 and AO353_09035 are separated by 421 nucleotidesAO353_09035 and AO353_09040 are separated by 4 nucleotidesAO353_09040 and AO353_09045 are separated by 13 nucleotides AO353_09030: AO353_09030 - iron donor protein CyaY, at 1,983,408 to 1,983,740 _09030 AO353_09035: AO353_09035 - diaminopimelate decarboxylase, at 1,984,162 to 1,985,409 _09035 AO353_09040: AO353_09040 - diaminopimelate epimerase, at 1,985,414 to 1,986,244 _09040 AO353_09045: AO353_09045 - hypothetical protein, at 1,986,258 to 1,986,983 _09045 Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1983.165 kb on + strandat 1983.165 kb on + strandat 1983.165 kb on + strandat 1983.165 kb on + strandat 1983.171 kb on + strandat 1983.172 kb on - strandat 1983.180 kb on + strandat 1983.180 kb on + strandat 1983.180 kb on + strandat 1983.181 kb on - strandat 1983.191 kb on + strandat 1983.192 kb on - strandat 1983.265 kb on + strandat 1983.328 kb on + strandat 1983.328 kb on + strandat 1983.328 kb on + strandat 1983.329 kb on - strandat 1983.329 kb on - strandat 1983.329 kb on - strandat 1983.329 kb on - strandat 1983.363 kb on + strandat 1983.363 kb on + strandat 1983.363 kb on + strandat 1983.363 kb on + strandat 1983.363 kb on + strandat 1983.364 kb on - strandat 1983.364 kb on - strandat 1983.364 kb on - strandat 1983.524 kb on - strand, within AO353_09030at 1983.677 kb on + strand, within AO353_09030at 1983.764 kb on - strandat 1983.787 kb on + strandat 1983.787 kb on + strandat 1983.840 kb on + strandat 1983.840 kb on + strandat 1983.840 kb on + strandat 1983.841 kb on - strandat 1983.841 kb on - strandat 1983.841 kb on - strandat 1983.841 kb on - strandat 1983.848 kb on - strandat 1983.916 kb on + strandat 1983.941 kb on + strandat 1983.941 kb on + strandat 1983.941 kb on + strandat 1983.941 kb on + strandat 1983.941 kb on + strandat 1984.060 kb on + strandat 1984.060 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.147 kb on + strandat 1984.150 kb on + strandat 1985.407 kb on + strandat 1985.428 kb on + strandat 1985.429 kb on - strandat 1985.500 kb on + strand, within AO353_09040at 1985.501 kb on - strand, within AO353_09040at 1985.501 kb on - strand, within AO353_09040at 1985.834 kb on + strand, within AO353_09040at 1986.213 kb on + strandat 1986.219 kb on + strandat 1986.219 kb on + strandat 1986.219 kb on + strandat 1986.219 kb on + strandat 1986.220 kb on - strandat 1986.221 kb on + strandat 1986.222 kb on - strandat 1986.222 kb on - strandat 1986.222 kb on - strandat 1986.222 kb on - strandat 1986.255 kb on + strandat 1986.255 kb on + strandat 1986.255 kb on + strandat 1986.255 kb on + strandat 1986.255 kb on + strandat 1986.255 kb on + strandat 1986.255 kb on + strandat 1986.255 kb on + strandat 1986.255 kb on + strandat 1986.256 kb on - strandat 1986.256 kb on - strandat 1986.256 kb on - strandat 1986.256 kb on - strandat 1986.256 kb on - strandat 1986.256 kb on - strandat 1986.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,983,165 + -0.2
1,983,165 + +1.0
1,983,165 + -0.2
1,983,165 + -0.2
1,983,171 + -0.3
1,983,172 - +0.4
1,983,180 + +1.2
1,983,180 + +0.0
1,983,180 + -0.3
1,983,181 - -0.2
1,983,191 + -1.5
1,983,192 - +0.1
1,983,265 + +0.3
1,983,328 + -0.3
1,983,328 + -2.8
1,983,328 + -0.3
1,983,329 - -0.5
1,983,329 - +0.8
1,983,329 - +0.3
1,983,329 - -0.2
1,983,363 + -1.5
1,983,363 + +0.5
1,983,363 + -1.0
1,983,363 + +1.8
1,983,363 + +1.5
1,983,364 - -1.0
1,983,364 - +0.3
1,983,364 - -0.6
1,983,524 - AO353_09030 0.35 +0.0
1,983,677 + AO353_09030 0.81 -1.0
1,983,764 - +0.1
1,983,787 + +0.1
1,983,787 + -0.0
1,983,840 + -0.0
1,983,840 + +0.2
1,983,840 + +0.3
1,983,841 - -0.1
1,983,841 - -0.2
1,983,841 - +0.8
1,983,841 - +0.5
1,983,848 - +0.5
1,983,916 + -0.2
1,983,941 + -1.0
1,983,941 + -0.5
1,983,941 + +0.4
1,983,941 + -1.4
1,983,941 + +0.5
1,984,060 + -1.7
1,984,060 + -0.6
1,984,147 + -0.5
1,984,147 + +0.4
1,984,147 + -0.2
1,984,147 + +0.1
1,984,147 + +0.0
1,984,147 + +0.6
1,984,147 + +1.8
1,984,147 + +0.8
1,984,147 + +1.3
1,984,147 + +0.2
1,984,147 + -1.5
1,984,147 + +0.4
1,984,147 + +0.3
1,984,147 + +0.2
1,984,147 + +0.3
1,984,147 + +0.1
1,984,150 + -1.4
1,985,407 + -0.8
1,985,428 + +0.0
1,985,429 - +0.0
1,985,500 + AO353_09040 0.10 -1.6
1,985,501 - AO353_09040 0.10 +0.2
1,985,501 - AO353_09040 0.10 -0.2
1,985,834 + AO353_09040 0.51 -0.9
1,986,213 + -0.2
1,986,219 + +0.1
1,986,219 + -0.5
1,986,219 + -0.8
1,986,219 + -1.2
1,986,220 - -2.1
1,986,221 + +0.9
1,986,222 - -0.8
1,986,222 - -1.8
1,986,222 - -2.7
1,986,222 - -0.8
1,986,255 + -0.5
1,986,255 + +0.2
1,986,255 + -1.0
1,986,255 + -0.6
1,986,255 + +0.8
1,986,255 + -0.6
1,986,255 + -0.5
1,986,255 + +0.8
1,986,255 + +0.8
1,986,256 - -1.0
1,986,256 - +3.4
1,986,256 - -1.5
1,986,256 - -0.2
1,986,256 - -0.2
1,986,256 - -1.8
1,986,256 - -2.7

Or see this region's nucleotide sequence