Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09030 and AO353_09035 are separated by 421 nucleotides AO353_09035 and AO353_09040 are separated by 4 nucleotides AO353_09040 and AO353_09045 are separated by 13 nucleotides
AO353_09030: AO353_09030 - iron donor protein CyaY, at 1,983,408 to 1,983,740
_09030
AO353_09035: AO353_09035 - diaminopimelate decarboxylase, at 1,984,162 to 1,985,409
_09035
AO353_09040: AO353_09040 - diaminopimelate epimerase, at 1,985,414 to 1,986,244
_09040
AO353_09045: AO353_09045 - hypothetical protein, at 1,986,258 to 1,986,983
_09045
Position (kb)
1984
1985
1986 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1983.165 kb on + strand at 1983.165 kb on + strand at 1983.165 kb on + strand at 1983.165 kb on + strand at 1983.171 kb on + strand at 1983.172 kb on - strand at 1983.180 kb on + strand at 1983.180 kb on + strand at 1983.180 kb on + strand at 1983.181 kb on - strand at 1983.191 kb on + strand at 1983.192 kb on - strand at 1983.265 kb on + strand at 1983.328 kb on + strand at 1983.328 kb on + strand at 1983.328 kb on + strand at 1983.329 kb on - strand at 1983.329 kb on - strand at 1983.329 kb on - strand at 1983.329 kb on - strand at 1983.363 kb on + strand at 1983.363 kb on + strand at 1983.363 kb on + strand at 1983.363 kb on + strand at 1983.363 kb on + strand at 1983.364 kb on - strand at 1983.364 kb on - strand at 1983.364 kb on - strand at 1983.524 kb on - strand, within AO353_09030 at 1983.677 kb on + strand, within AO353_09030 at 1983.764 kb on - strand at 1983.787 kb on + strand at 1983.787 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.841 kb on - strand at 1983.841 kb on - strand at 1983.841 kb on - strand at 1983.841 kb on - strand at 1983.848 kb on - strand at 1983.916 kb on + strand at 1983.941 kb on + strand at 1983.941 kb on + strand at 1983.941 kb on + strand at 1983.941 kb on + strand at 1983.941 kb on + strand at 1984.060 kb on + strand at 1984.060 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.147 kb on + strand at 1984.150 kb on + strand at 1985.407 kb on + strand at 1985.428 kb on + strand at 1985.429 kb on - strand at 1985.500 kb on + strand, within AO353_09040 at 1985.501 kb on - strand, within AO353_09040 at 1985.501 kb on - strand, within AO353_09040 at 1985.834 kb on + strand, within AO353_09040 at 1986.213 kb on + strand at 1986.219 kb on + strand at 1986.219 kb on + strand at 1986.219 kb on + strand at 1986.219 kb on + strand at 1986.220 kb on - strand at 1986.221 kb on + strand at 1986.222 kb on - strand at 1986.222 kb on - strand at 1986.222 kb on - strand at 1986.222 kb on - strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,983,165 + -0.2 1,983,165 + +1.0 1,983,165 + -0.2 1,983,165 + -0.2 1,983,171 + -0.3 1,983,172 - +0.4 1,983,180 + +1.2 1,983,180 + +0.0 1,983,180 + -0.3 1,983,181 - -0.2 1,983,191 + -1.5 1,983,192 - +0.1 1,983,265 + +0.3 1,983,328 + -0.3 1,983,328 + -2.8 1,983,328 + -0.3 1,983,329 - -0.5 1,983,329 - +0.8 1,983,329 - +0.3 1,983,329 - -0.2 1,983,363 + -1.5 1,983,363 + +0.5 1,983,363 + -1.0 1,983,363 + +1.8 1,983,363 + +1.5 1,983,364 - -1.0 1,983,364 - +0.3 1,983,364 - -0.6 1,983,524 - AO353_09030 0.35 +0.0 1,983,677 + AO353_09030 0.81 -1.0 1,983,764 - +0.1 1,983,787 + +0.1 1,983,787 + -0.0 1,983,840 + -0.0 1,983,840 + +0.2 1,983,840 + +0.3 1,983,841 - -0.1 1,983,841 - -0.2 1,983,841 - +0.8 1,983,841 - +0.5 1,983,848 - +0.5 1,983,916 + -0.2 1,983,941 + -1.0 1,983,941 + -0.5 1,983,941 + +0.4 1,983,941 + -1.4 1,983,941 + +0.5 1,984,060 + -1.7 1,984,060 + -0.6 1,984,147 + -0.5 1,984,147 + +0.4 1,984,147 + -0.2 1,984,147 + +0.1 1,984,147 + +0.0 1,984,147 + +0.6 1,984,147 + +1.8 1,984,147 + +0.8 1,984,147 + +1.3 1,984,147 + +0.2 1,984,147 + -1.5 1,984,147 + +0.4 1,984,147 + +0.3 1,984,147 + +0.2 1,984,147 + +0.3 1,984,147 + +0.1 1,984,150 + -1.4 1,985,407 + -0.8 1,985,428 + +0.0 1,985,429 - +0.0 1,985,500 + AO353_09040 0.10 -1.6 1,985,501 - AO353_09040 0.10 +0.2 1,985,501 - AO353_09040 0.10 -0.2 1,985,834 + AO353_09040 0.51 -0.9 1,986,213 + -0.2 1,986,219 + +0.1 1,986,219 + -0.5 1,986,219 + -0.8 1,986,219 + -1.2 1,986,220 - -2.1 1,986,221 + +0.9 1,986,222 - -0.8 1,986,222 - -1.8 1,986,222 - -2.7 1,986,222 - -0.8 1,986,255 + -0.5 1,986,255 + +0.2 1,986,255 + -1.0 1,986,255 + -0.6 1,986,255 + +0.8 1,986,255 + -0.6 1,986,255 + -0.5 1,986,255 + +0.8 1,986,255 + +0.8 1,986,256 - -1.0 1,986,256 - +3.4 1,986,256 - -1.5 1,986,256 - -0.2 1,986,256 - -0.2 1,986,256 - -1.8 1,986,256 - -2.7
Or see this region's nucleotide sequence