Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03865

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_03860 and AO353_03865 overlap by 4 nucleotidesAO353_03865 and AO353_03870 are separated by 159 nucleotides AO353_03860: AO353_03860 - aldehyde dehydrogenase, at 824,682 to 826,130 _03860 AO353_03865: AO353_03865 - hypothetical protein, at 826,127 to 827,764 _03865 AO353_03870: AO353_03870 - LysR family transcriptional regulator, at 827,924 to 828,805 _03870 Position (kb) 826 827 828Strain fitness (log2 ratio) -1 0 1 2 3at 825.128 kb on - strand, within AO353_03860at 825.790 kb on + strand, within AO353_03860at 825.791 kb on - strand, within AO353_03860at 825.791 kb on - strand, within AO353_03860at 825.791 kb on - strand, within AO353_03860at 825.793 kb on + strand, within AO353_03860at 825.793 kb on + strand, within AO353_03860at 825.794 kb on - strand, within AO353_03860at 825.794 kb on - strand, within AO353_03860at 825.794 kb on - strand, within AO353_03860at 825.871 kb on + strand, within AO353_03860at 825.871 kb on + strand, within AO353_03860at 825.871 kb on + strand, within AO353_03860at 825.871 kb on + strand, within AO353_03860at 825.871 kb on + strand, within AO353_03860at 825.871 kb on + strand, within AO353_03860at 825.871 kb on + strand, within AO353_03860at 826.097 kb on + strandat 826.099 kb on + strandat 826.099 kb on + strandat 826.099 kb on + strandat 826.099 kb on + strandat 826.099 kb on + strandat 826.099 kb on + strandat 826.099 kb on + strandat 826.099 kb on + strandat 826.100 kb on - strandat 826.100 kb on - strandat 826.100 kb on - strandat 826.100 kb on - strandat 826.290 kb on + strandat 826.290 kb on + strandat 826.290 kb on + strandat 826.290 kb on + strandat 826.290 kb on + strandat 826.290 kb on + strandat 826.290 kb on + strandat 826.290 kb on + strandat 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strandat 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.291 kb on - strand, within AO353_03865at 826.332 kb on + strand, within AO353_03865at 826.332 kb on + strand, within AO353_03865at 826.332 kb on + strand, within AO353_03865at 826.332 kb on + strand, within AO353_03865at 826.332 kb on + strand, within AO353_03865at 826.332 kb on + strand, within AO353_03865at 826.332 kb on + strand, within AO353_03865at 826.332 kb on + strand, within AO353_03865at 826.332 kb on + strand, within AO353_03865at 826.333 kb on - strand, within AO353_03865at 826.333 kb on - strand, within AO353_03865at 826.333 kb on - strand, within AO353_03865at 826.333 kb on - strand, within AO353_03865at 826.333 kb on - strand, within AO353_03865at 826.333 kb on - strand, within AO353_03865at 826.333 kb on - strand, within AO353_03865at 826.333 kb on - strand, within AO353_03865at 826.333 kb on - strand, within AO353_03865at 826.361 kb on - strand, within AO353_03865at 826.524 kb on + strand, within AO353_03865at 826.602 kb on + strand, within AO353_03865at 826.602 kb on + strand, within AO353_03865at 826.602 kb on + strand, within AO353_03865at 826.603 kb on - strand, within AO353_03865at 826.603 kb on - strand, within AO353_03865at 826.603 kb on - strand, within AO353_03865at 826.603 kb on - strand, within AO353_03865at 826.846 kb on - strand, within AO353_03865at 826.929 kb on + strand, within AO353_03865at 826.930 kb on - strand, within AO353_03865at 827.091 kb on - strand, within AO353_03865at 827.091 kb on - strand, within AO353_03865at 827.374 kb on + strand, within AO353_03865at 827.375 kb on - strand, within AO353_03865at 827.592 kb on + strand, within AO353_03865at 827.593 kb on - strand, within AO353_03865at 827.683 kb on + strandat 827.684 kb on - strandat 827.733 kb on - strandat 827.744 kb on + strandat 827.744 kb on + strandat 827.744 kb on + strandat 827.745 kb on - strandat 827.745 kb on - strandat 827.745 kb on - strandat 827.764 kb on + strandat 827.765 kb on - strandat 827.765 kb on - strandat 827.765 kb on - strandat 827.771 kb on - strandat 827.878 kb on + strandat 827.888 kb on + strandat 827.889 kb on - strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.924 kb on - strandat 827.924 kb on - strandat 827.924 kb on - strandat 828.068 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.586 kb on - strand, within AO353_03870at 828.716 kb on + strand, within AO353_03870at 828.716 kb on + strand, within AO353_03870at 828.719 kb on + strandat 828.719 kb on + strandat 828.719 kb on + strandat 828.720 kb on - strandat 828.720 kb on - strandat 828.720 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
825,128 - AO353_03860 0.31 +0.9
825,790 + AO353_03860 0.76 +1.0
825,791 - AO353_03860 0.77 +1.1
825,791 - AO353_03860 0.77 +3.5
825,791 - AO353_03860 0.77 +0.5
825,793 + AO353_03860 0.77 -0.5
825,793 + AO353_03860 0.77 +0.3
825,794 - AO353_03860 0.77 -1.6
825,794 - AO353_03860 0.77 +2.0
825,794 - AO353_03860 0.77 +0.5
825,871 + AO353_03860 0.82 +0.3
825,871 + AO353_03860 0.82 -0.1
825,871 + AO353_03860 0.82 -0.8
825,871 + AO353_03860 0.82 -0.3
825,871 + AO353_03860 0.82 +0.0
825,871 + AO353_03860 0.82 +0.2
825,871 + AO353_03860 0.82 +0.3
826,097 + -0.0
826,099 + -0.2
826,099 + +1.5
826,099 + +0.9
826,099 + +0.8
826,099 + -0.5
826,099 + +1.0
826,099 + +0.1
826,099 + -0.7
826,100 - +0.6
826,100 - +1.5
826,100 - -0.7
826,100 - -0.4
826,290 + +0.7
826,290 + +0.8
826,290 + -0.1
826,290 + +0.1
826,290 + +0.4
826,290 + -0.1
826,290 + +0.8
826,290 + +1.5
826,291 - AO353_03865 0.10 +0.4
826,291 - AO353_03865 0.10 +1.5
826,291 - AO353_03865 0.10 +0.5
826,291 - AO353_03865 0.10 +0.0
826,291 - +1.5
826,291 - AO353_03865 0.10 +1.0
826,291 - AO353_03865 0.10 +1.7
826,291 - AO353_03865 0.10 +0.0
826,291 - AO353_03865 0.10 +0.5
826,291 - AO353_03865 0.10 +0.1
826,291 - AO353_03865 0.10 -1.6
826,291 - AO353_03865 0.10 -0.1
826,291 - AO353_03865 0.10 -0.6
826,291 - AO353_03865 0.10 -0.7
826,332 + AO353_03865 0.13 -1.0
826,332 + AO353_03865 0.13 -0.7
826,332 + AO353_03865 0.13 +0.7
826,332 + AO353_03865 0.13 +1.0
826,332 + AO353_03865 0.13 -0.7
826,332 + AO353_03865 0.13 +0.8
826,332 + AO353_03865 0.13 -0.4
826,332 + AO353_03865 0.13 +0.5
826,332 + AO353_03865 0.13 +0.1
826,333 - AO353_03865 0.13 -0.8
826,333 - AO353_03865 0.13 -0.4
826,333 - AO353_03865 0.13 -0.1
826,333 - AO353_03865 0.13 +1.1
826,333 - AO353_03865 0.13 +0.3
826,333 - AO353_03865 0.13 -0.1
826,333 - AO353_03865 0.13 -0.0
826,333 - AO353_03865 0.13 -0.1
826,333 - AO353_03865 0.13 +0.7
826,361 - AO353_03865 0.14 -1.1
826,524 + AO353_03865 0.24 +0.0
826,602 + AO353_03865 0.29 -0.5
826,602 + AO353_03865 0.29 -0.5
826,602 + AO353_03865 0.29 +0.9
826,603 - AO353_03865 0.29 +0.5
826,603 - AO353_03865 0.29 -0.6
826,603 - AO353_03865 0.29 +0.6
826,603 - AO353_03865 0.29 -0.3
826,846 - AO353_03865 0.44 +1.0
826,929 + AO353_03865 0.49 +0.4
826,930 - AO353_03865 0.49 -0.5
827,091 - AO353_03865 0.59 +1.6
827,091 - AO353_03865 0.59 +1.0
827,374 + AO353_03865 0.76 -0.5
827,375 - AO353_03865 0.76 +1.0
827,592 + AO353_03865 0.89 +1.1
827,593 - AO353_03865 0.89 -0.7
827,683 + -1.1
827,684 - -0.4
827,733 - +0.1
827,744 + -0.6
827,744 + -0.2
827,744 + -0.5
827,745 - +0.2
827,745 - -0.3
827,745 - -0.4
827,764 + -1.0
827,765 - -1.0
827,765 - +0.1
827,765 - -0.1
827,771 - -0.6
827,878 + +1.6
827,888 + -0.0
827,889 - -0.1
827,923 + -1.4
827,923 + -0.9
827,923 + +1.2
827,923 + -0.0
827,923 + +0.0
827,923 + -0.7
827,923 + -0.1
827,924 - +0.3
827,924 - +0.4
827,924 - -0.8
828,068 + AO353_03870 0.16 +0.7
828,353 + AO353_03870 0.49 +0.6
828,353 + AO353_03870 0.49 -0.5
828,353 + AO353_03870 0.49 -0.4
828,353 + AO353_03870 0.49 +0.2
828,354 - AO353_03870 0.49 +1.9
828,354 - AO353_03870 0.49 +1.0
828,354 - AO353_03870 0.49 -0.2
828,354 - AO353_03870 0.49 -1.5
828,354 - AO353_03870 0.49 -0.7
828,354 - AO353_03870 0.49 -1.7
828,354 - AO353_03870 0.49 -1.4
828,586 - AO353_03870 0.75 +0.2
828,716 + AO353_03870 0.90 -0.4
828,716 + AO353_03870 0.90 -0.2
828,719 + +0.5
828,719 + -1.4
828,719 + +0.5
828,720 - -1.5
828,720 - +0.3
828,720 - +0.3

Or see this region's nucleotide sequence