Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22465

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22460 and ABZR87_RS22465 overlap by 4 nucleotidesABZR87_RS22465 and ABZR87_RS22470 are separated by 10 nucleotidesABZR87_RS22470 and ABZR87_RS22475 are separated by 13 nucleotides ABZR87_RS22460: ABZR87_RS22460 - ABC transporter ATP-binding protein, at 1,397,352 to 1,398,416 _RS22460 ABZR87_RS22465: ABZR87_RS22465 - ABC transporter permease, at 1,398,413 to 1,399,270 _RS22465 ABZR87_RS22470: ABZR87_RS22470 - ABC transporter permease, at 1,399,281 to 1,400,075 _RS22470 ABZR87_RS22475: ABZR87_RS22475 - (2Fe-2S)-binding protein, at 1,400,089 to 1,400,415 _RS22475 Position (kb) 1398 1399 1400Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1397.601 kb on + strand, within ABZR87_RS22460at 1397.601 kb on + strand, within ABZR87_RS22460at 1397.601 kb on + strand, within ABZR87_RS22460at 1397.601 kb on + strand, within ABZR87_RS22460at 1397.602 kb on - strand, within ABZR87_RS22460at 1397.602 kb on - strand, within ABZR87_RS22460at 1397.602 kb on - strand, within ABZR87_RS22460at 1397.602 kb on - strand, within ABZR87_RS22460at 1397.602 kb on - strand, within ABZR87_RS22460at 1397.602 kb on - strand, within ABZR87_RS22460at 1397.729 kb on + strand, within ABZR87_RS22460at 1397.730 kb on - strand, within ABZR87_RS22460at 1397.999 kb on + strand, within ABZR87_RS22460at 1398.000 kb on - strand, within ABZR87_RS22460at 1398.016 kb on - strand, within ABZR87_RS22460at 1398.273 kb on + strand, within ABZR87_RS22460at 1398.273 kb on + strand, within ABZR87_RS22460at 1398.273 kb on + strand, within ABZR87_RS22460at 1398.273 kb on + strand, within ABZR87_RS22460at 1398.273 kb on + strand, within ABZR87_RS22460at 1398.273 kb on + strand, within ABZR87_RS22460at 1398.274 kb on - strand, within ABZR87_RS22460at 1398.274 kb on - strand, within ABZR87_RS22460at 1398.274 kb on - strand, within ABZR87_RS22460at 1398.378 kb on + strandat 1398.379 kb on - strandat 1398.576 kb on - strand, within ABZR87_RS22465at 1398.599 kb on + strand, within ABZR87_RS22465at 1398.599 kb on + strand, within ABZR87_RS22465at 1398.599 kb on + strand, within ABZR87_RS22465at 1398.600 kb on - strand, within ABZR87_RS22465at 1398.600 kb on - strand, within ABZR87_RS22465at 1398.600 kb on - strand, within ABZR87_RS22465at 1398.600 kb on - strand, within ABZR87_RS22465at 1398.600 kb on - strand, within ABZR87_RS22465at 1398.602 kb on + strand, within ABZR87_RS22465at 1398.602 kb on + strand, within ABZR87_RS22465at 1398.602 kb on + strand, within ABZR87_RS22465at 1398.603 kb on - strand, within ABZR87_RS22465at 1398.603 kb on - strand, within ABZR87_RS22465at 1398.603 kb on - strand, within ABZR87_RS22465at 1398.603 kb on - strand, within ABZR87_RS22465at 1398.606 kb on - strand, within ABZR87_RS22465at 1398.606 kb on - strand, within ABZR87_RS22465at 1398.683 kb on + strand, within ABZR87_RS22465at 1398.683 kb on + strand, within ABZR87_RS22465at 1398.683 kb on + strand, within ABZR87_RS22465at 1398.684 kb on - strand, within ABZR87_RS22465at 1398.684 kb on - strand, within ABZR87_RS22465at 1398.857 kb on + strand, within ABZR87_RS22465at 1398.858 kb on - strand, within ABZR87_RS22465at 1398.858 kb on - strand, within ABZR87_RS22465at 1398.858 kb on - strand, within ABZR87_RS22465at 1398.858 kb on - strand, within ABZR87_RS22465at 1399.136 kb on + strand, within ABZR87_RS22465at 1399.145 kb on + strand, within ABZR87_RS22465at 1399.250 kb on + strandat 1399.332 kb on + strandat 1399.549 kb on - strand, within ABZR87_RS22470at 1399.570 kb on - strand, within ABZR87_RS22470at 1399.570 kb on - strand, within ABZR87_RS22470at 1399.710 kb on + strand, within ABZR87_RS22470at 1399.710 kb on + strand, within ABZR87_RS22470at 1399.711 kb on - strand, within ABZR87_RS22470at 1399.774 kb on - strand, within ABZR87_RS22470at 1399.941 kb on + strand, within ABZR87_RS22470at 1399.941 kb on + strand, within ABZR87_RS22470at 1399.941 kb on + strand, within ABZR87_RS22470at 1399.942 kb on - strand, within ABZR87_RS22470at 1399.942 kb on - strand, within ABZR87_RS22470at 1399.942 kb on - strand, within ABZR87_RS22470at 1399.942 kb on - strand, within ABZR87_RS22470at 1399.942 kb on - strand, within ABZR87_RS22470at 1399.942 kb on - strand, within ABZR87_RS22470at 1399.947 kb on + strand, within ABZR87_RS22470at 1399.947 kb on + strand, within ABZR87_RS22470at 1399.947 kb on + strand, within ABZR87_RS22470at 1399.948 kb on - strand, within ABZR87_RS22470at 1399.948 kb on - strand, within ABZR87_RS22470at 1399.948 kb on - strand, within ABZR87_RS22470

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,397,601 + ABZR87_RS22460 0.23 +0.9
1,397,601 + ABZR87_RS22460 0.23 +0.1
1,397,601 + ABZR87_RS22460 0.23 -0.8
1,397,601 + ABZR87_RS22460 0.23 +0.7
1,397,602 - ABZR87_RS22460 0.23 +0.0
1,397,602 - ABZR87_RS22460 0.23 -0.9
1,397,602 - ABZR87_RS22460 0.23 +0.8
1,397,602 - ABZR87_RS22460 0.23 +0.3
1,397,602 - ABZR87_RS22460 0.23 -0.8
1,397,602 - ABZR87_RS22460 0.23 +1.4
1,397,729 + ABZR87_RS22460 0.35 -1.2
1,397,730 - ABZR87_RS22460 0.35 -1.5
1,397,999 + ABZR87_RS22460 0.61 +1.1
1,398,000 - ABZR87_RS22460 0.61 +0.6
1,398,016 - ABZR87_RS22460 0.62 -0.0
1,398,273 + ABZR87_RS22460 0.86 +0.1
1,398,273 + ABZR87_RS22460 0.86 -0.4
1,398,273 + ABZR87_RS22460 0.86 -1.5
1,398,273 + ABZR87_RS22460 0.86 -0.7
1,398,273 + ABZR87_RS22460 0.86 +0.9
1,398,273 + ABZR87_RS22460 0.86 +1.2
1,398,274 - ABZR87_RS22460 0.87 -0.2
1,398,274 - ABZR87_RS22460 0.87 -2.5
1,398,274 - ABZR87_RS22460 0.87 -0.5
1,398,378 + -0.2
1,398,379 - -0.9
1,398,576 - ABZR87_RS22465 0.19 -0.7
1,398,599 + ABZR87_RS22465 0.22 -1.8
1,398,599 + ABZR87_RS22465 0.22 -1.2
1,398,599 + ABZR87_RS22465 0.22 -0.4
1,398,600 - ABZR87_RS22465 0.22 -1.5
1,398,600 - ABZR87_RS22465 0.22 -1.3
1,398,600 - ABZR87_RS22465 0.22 +0.8
1,398,600 - ABZR87_RS22465 0.22 +3.0
1,398,600 - ABZR87_RS22465 0.22 +0.1
1,398,602 + ABZR87_RS22465 0.22 -1.0
1,398,602 + ABZR87_RS22465 0.22 -0.4
1,398,602 + ABZR87_RS22465 0.22 +0.1
1,398,603 - ABZR87_RS22465 0.22 +1.3
1,398,603 - ABZR87_RS22465 0.22 -1.3
1,398,603 - ABZR87_RS22465 0.22 -1.0
1,398,603 - ABZR87_RS22465 0.22 -0.2
1,398,606 - ABZR87_RS22465 0.22 -0.5
1,398,606 - ABZR87_RS22465 0.22 -0.3
1,398,683 + ABZR87_RS22465 0.31 -1.2
1,398,683 + ABZR87_RS22465 0.31 +0.5
1,398,683 + ABZR87_RS22465 0.31 -0.4
1,398,684 - ABZR87_RS22465 0.32 -2.2
1,398,684 - ABZR87_RS22465 0.32 -1.1
1,398,857 + ABZR87_RS22465 0.52 +0.1
1,398,858 - ABZR87_RS22465 0.52 -1.3
1,398,858 - ABZR87_RS22465 0.52 +0.1
1,398,858 - ABZR87_RS22465 0.52 -0.9
1,398,858 - ABZR87_RS22465 0.52 +0.2
1,399,136 + ABZR87_RS22465 0.84 -0.9
1,399,145 + ABZR87_RS22465 0.85 -0.1
1,399,250 + +0.6
1,399,332 + +0.6
1,399,549 - ABZR87_RS22470 0.34 -0.3
1,399,570 - ABZR87_RS22470 0.36 +0.1
1,399,570 - ABZR87_RS22470 0.36 -0.6
1,399,710 + ABZR87_RS22470 0.54 +0.5
1,399,710 + ABZR87_RS22470 0.54 +0.7
1,399,711 - ABZR87_RS22470 0.54 +0.8
1,399,774 - ABZR87_RS22470 0.62 -0.7
1,399,941 + ABZR87_RS22470 0.83 +0.8
1,399,941 + ABZR87_RS22470 0.83 -2.0
1,399,941 + ABZR87_RS22470 0.83 -1.2
1,399,942 - ABZR87_RS22470 0.83 -0.1
1,399,942 - ABZR87_RS22470 0.83 +2.9
1,399,942 - ABZR87_RS22470 0.83 +2.0
1,399,942 - ABZR87_RS22470 0.83 -0.7
1,399,942 - ABZR87_RS22470 0.83 +0.4
1,399,942 - ABZR87_RS22470 0.83 +0.3
1,399,947 + ABZR87_RS22470 0.84 +0.9
1,399,947 + ABZR87_RS22470 0.84 +0.4
1,399,947 + ABZR87_RS22470 0.84 +0.6
1,399,948 - ABZR87_RS22470 0.84 -0.7
1,399,948 - ABZR87_RS22470 0.84 -1.4
1,399,948 - ABZR87_RS22470 0.84 -2.1

Or see this region's nucleotide sequence