Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22120

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22110 and ABZR87_RS22115 overlap by 16 nucleotidesABZR87_RS22115 and ABZR87_RS22120 are separated by 2 nucleotidesABZR87_RS22120 and ABZR87_RS22125 overlap by 4 nucleotidesABZR87_RS22125 and ABZR87_RS22130 overlap by 4 nucleotides ABZR87_RS22110: ABZR87_RS22110 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 1,328,367 to 1,329,518 _RS22110 ABZR87_RS22115: ABZR87_RS22115 - phytanoyl-CoA dioxygenase family protein, at 1,329,503 to 1,330,345 _RS22115 ABZR87_RS22120: ABZR87_RS22120 - class I SAM-dependent methyltransferase, at 1,330,348 to 1,331,535 _RS22120 ABZR87_RS22125: ABZR87_RS22125 - GNAT family protein, at 1,331,532 to 1,332,047 _RS22125 ABZR87_RS22130: ABZR87_RS22130 - WbqC family protein, at 1,332,044 to 1,332,757 _RS22130 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1329.385 kb on - strand, within ABZR87_RS22110at 1329.385 kb on - strand, within ABZR87_RS22110at 1329.385 kb on - strand, within ABZR87_RS22110at 1329.576 kb on - strandat 1329.614 kb on + strand, within ABZR87_RS22115at 1329.614 kb on + strand, within ABZR87_RS22115at 1329.615 kb on - strand, within ABZR87_RS22115at 1329.615 kb on - strand, within ABZR87_RS22115at 1329.615 kb on - strand, within ABZR87_RS22115at 1329.644 kb on + strand, within ABZR87_RS22115at 1329.644 kb on + strand, within ABZR87_RS22115at 1329.645 kb on - strand, within ABZR87_RS22115at 1329.645 kb on - strand, within ABZR87_RS22115at 1329.699 kb on - strand, within ABZR87_RS22115at 1329.743 kb on + strand, within ABZR87_RS22115at 1329.743 kb on + strand, within ABZR87_RS22115at 1329.743 kb on + strand, within ABZR87_RS22115at 1329.744 kb on - strand, within ABZR87_RS22115at 1329.917 kb on + strand, within ABZR87_RS22115at 1330.079 kb on + strand, within ABZR87_RS22115at 1330.110 kb on - strand, within ABZR87_RS22115at 1330.110 kb on - strand, within ABZR87_RS22115at 1330.290 kb on - strandat 1330.290 kb on - strandat 1330.406 kb on - strandat 1330.531 kb on + strand, within ABZR87_RS22120at 1330.531 kb on + strand, within ABZR87_RS22120at 1330.532 kb on - strand, within ABZR87_RS22120at 1330.532 kb on - strand, within ABZR87_RS22120at 1330.543 kb on + strand, within ABZR87_RS22120at 1330.583 kb on - strand, within ABZR87_RS22120at 1330.686 kb on - strand, within ABZR87_RS22120at 1330.686 kb on - strand, within ABZR87_RS22120at 1330.828 kb on + strand, within ABZR87_RS22120at 1330.828 kb on + strand, within ABZR87_RS22120at 1330.828 kb on + strand, within ABZR87_RS22120at 1330.828 kb on + strand, within ABZR87_RS22120at 1330.829 kb on - strand, within ABZR87_RS22120at 1330.829 kb on - strand, within ABZR87_RS22120at 1330.957 kb on + strand, within ABZR87_RS22120at 1331.215 kb on + strand, within ABZR87_RS22120at 1331.282 kb on - strand, within ABZR87_RS22120at 1331.296 kb on + strand, within ABZR87_RS22120at 1331.297 kb on - strand, within ABZR87_RS22120at 1331.297 kb on - strand, within ABZR87_RS22120at 1331.297 kb on - strand, within ABZR87_RS22120at 1331.440 kb on + strandat 1331.440 kb on + strandat 1331.440 kb on + strandat 1331.441 kb on - strandat 1331.743 kb on + strand, within ABZR87_RS22125at 1331.744 kb on - strand, within ABZR87_RS22125at 1331.752 kb on - strand, within ABZR87_RS22125at 1331.752 kb on - strand, within ABZR87_RS22125at 1331.989 kb on - strand, within ABZR87_RS22125at 1331.989 kb on - strand, within ABZR87_RS22125at 1331.989 kb on - strand, within ABZR87_RS22125at 1331.989 kb on - strand, within ABZR87_RS22125at 1332.128 kb on + strand, within ABZR87_RS22130at 1332.128 kb on + strand, within ABZR87_RS22130at 1332.129 kb on - strand, within ABZR87_RS22130at 1332.312 kb on - strand, within ABZR87_RS22130at 1332.362 kb on + strand, within ABZR87_RS22130at 1332.362 kb on + strand, within ABZR87_RS22130at 1332.362 kb on + strand, within ABZR87_RS22130at 1332.374 kb on + strand, within ABZR87_RS22130at 1332.426 kb on - strand, within ABZR87_RS22130

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,329,385 - ABZR87_RS22110 0.88 +0.0
1,329,385 - ABZR87_RS22110 0.88 +2.3
1,329,385 - ABZR87_RS22110 0.88 +0.4
1,329,576 - -0.1
1,329,614 + ABZR87_RS22115 0.13 +0.3
1,329,614 + ABZR87_RS22115 0.13 -0.9
1,329,615 - ABZR87_RS22115 0.13 +1.1
1,329,615 - ABZR87_RS22115 0.13 -1.9
1,329,615 - ABZR87_RS22115 0.13 -1.8
1,329,644 + ABZR87_RS22115 0.17 -0.6
1,329,644 + ABZR87_RS22115 0.17 +2.7
1,329,645 - ABZR87_RS22115 0.17 -1.0
1,329,645 - ABZR87_RS22115 0.17 +0.4
1,329,699 - ABZR87_RS22115 0.23 +5.0
1,329,743 + ABZR87_RS22115 0.28 -1.5
1,329,743 + ABZR87_RS22115 0.28 -0.3
1,329,743 + ABZR87_RS22115 0.28 -0.5
1,329,744 - ABZR87_RS22115 0.29 +1.4
1,329,917 + ABZR87_RS22115 0.49 -0.2
1,330,079 + ABZR87_RS22115 0.68 -0.1
1,330,110 - ABZR87_RS22115 0.72 +0.1
1,330,110 - ABZR87_RS22115 0.72 -0.4
1,330,290 - +0.1
1,330,290 - +0.7
1,330,406 - -0.8
1,330,531 + ABZR87_RS22120 0.15 -0.1
1,330,531 + ABZR87_RS22120 0.15 +1.6
1,330,532 - ABZR87_RS22120 0.15 -1.9
1,330,532 - ABZR87_RS22120 0.15 -1.1
1,330,543 + ABZR87_RS22120 0.16 -0.4
1,330,583 - ABZR87_RS22120 0.20 -0.0
1,330,686 - ABZR87_RS22120 0.28 -0.6
1,330,686 - ABZR87_RS22120 0.28 -0.4
1,330,828 + ABZR87_RS22120 0.40 +1.9
1,330,828 + ABZR87_RS22120 0.40 +0.4
1,330,828 + ABZR87_RS22120 0.40 -0.1
1,330,828 + ABZR87_RS22120 0.40 +0.6
1,330,829 - ABZR87_RS22120 0.40 +0.7
1,330,829 - ABZR87_RS22120 0.40 +0.1
1,330,957 + ABZR87_RS22120 0.51 -0.3
1,331,215 + ABZR87_RS22120 0.73 -1.1
1,331,282 - ABZR87_RS22120 0.79 -0.9
1,331,296 + ABZR87_RS22120 0.80 -0.7
1,331,297 - ABZR87_RS22120 0.80 -0.5
1,331,297 - ABZR87_RS22120 0.80 +0.4
1,331,297 - ABZR87_RS22120 0.80 -0.2
1,331,440 + +0.6
1,331,440 + -1.0
1,331,440 + +1.6
1,331,441 - +0.5
1,331,743 + ABZR87_RS22125 0.41 +0.7
1,331,744 - ABZR87_RS22125 0.41 -0.9
1,331,752 - ABZR87_RS22125 0.43 +1.2
1,331,752 - ABZR87_RS22125 0.43 +4.0
1,331,989 - ABZR87_RS22125 0.89 -0.3
1,331,989 - ABZR87_RS22125 0.89 -0.7
1,331,989 - ABZR87_RS22125 0.89 +0.6
1,331,989 - ABZR87_RS22125 0.89 -0.2
1,332,128 + ABZR87_RS22130 0.12 +0.1
1,332,128 + ABZR87_RS22130 0.12 +0.8
1,332,129 - ABZR87_RS22130 0.12 -0.6
1,332,312 - ABZR87_RS22130 0.38 +0.9
1,332,362 + ABZR87_RS22130 0.45 -0.5
1,332,362 + ABZR87_RS22130 0.45 +0.1
1,332,362 + ABZR87_RS22130 0.45 +0.6
1,332,374 + ABZR87_RS22130 0.46 -0.1
1,332,426 - ABZR87_RS22130 0.54 -0.8

Or see this region's nucleotide sequence