Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21800 and ABZR87_RS21805 overlap by 4 nucleotides ABZR87_RS21805 and ABZR87_RS21810 are separated by 49 nucleotides ABZR87_RS21810 and ABZR87_RS21815 overlap by 4 nucleotides ABZR87_RS21815 and ABZR87_RS21820 overlap by 4 nucleotides
ABZR87_RS21800: ABZR87_RS21800 - SPFH domain-containing protein, at 1,275,364 to 1,276,407
_RS21800
ABZR87_RS21805: ABZR87_RS21805 - sugar kinase, at 1,276,404 to 1,277,336
_RS21805
ABZR87_RS21810: ABZR87_RS21810 - enoyl-CoA hydratase, at 1,277,386 to 1,278,174
_RS21810
ABZR87_RS21815: ABZR87_RS21815 - MarR family winged helix-turn-helix transcriptional regulator, at 1,278,171 to 1,278,605
_RS21815
ABZR87_RS21820: ABZR87_RS21820 - alpha/beta hydrolase, at 1,278,602 to 1,279,489
_RS21820
Position (kb) 1277
1278
1279 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1276.429 kb on + strand at 1276.430 kb on - strand at 1276.500 kb on + strand, within ABZR87_RS21805 at 1276.501 kb on - strand, within ABZR87_RS21805 at 1276.534 kb on - strand, within ABZR87_RS21805 at 1276.626 kb on + strand, within ABZR87_RS21805 at 1276.659 kb on - strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.935 kb on + strand, within ABZR87_RS21805 at 1277.089 kb on - strand, within ABZR87_RS21805 at 1277.119 kb on + strand, within ABZR87_RS21805 at 1277.119 kb on + strand, within ABZR87_RS21805 at 1277.120 kb on - strand, within ABZR87_RS21805 at 1277.120 kb on - strand, within ABZR87_RS21805 at 1277.265 kb on + strand at 1277.265 kb on + strand at 1277.266 kb on - strand at 1277.612 kb on + strand, within ABZR87_RS21810 at 1277.613 kb on - strand, within ABZR87_RS21810 at 1278.081 kb on - strand, within ABZR87_RS21810 at 1278.249 kb on - strand, within ABZR87_RS21815 at 1278.577 kb on + strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.832 kb on - strand, within ABZR87_RS21820 at 1278.901 kb on - strand, within ABZR87_RS21820 at 1278.987 kb on + strand, within ABZR87_RS21820 at 1278.987 kb on + strand, within ABZR87_RS21820 at 1278.987 kb on + strand, within ABZR87_RS21820 at 1278.988 kb on - strand, within ABZR87_RS21820
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,276,429 + +1.2 1,276,430 - -1.2 1,276,500 + ABZR87_RS21805 0.10 +0.7 1,276,501 - ABZR87_RS21805 0.10 -0.7 1,276,534 - ABZR87_RS21805 0.14 +0.0 1,276,626 + ABZR87_RS21805 0.24 -0.8 1,276,659 - ABZR87_RS21805 0.27 -0.4 1,276,707 + ABZR87_RS21805 0.32 -0.1 1,276,707 + ABZR87_RS21805 0.32 -2.5 1,276,707 + ABZR87_RS21805 0.32 -0.4 1,276,707 + ABZR87_RS21805 0.32 -1.1 1,276,707 + ABZR87_RS21805 0.32 +4.1 1,276,707 + ABZR87_RS21805 0.32 -0.1 1,276,935 + ABZR87_RS21805 0.57 +0.0 1,277,089 - ABZR87_RS21805 0.73 -0.0 1,277,119 + ABZR87_RS21805 0.77 -0.2 1,277,119 + ABZR87_RS21805 0.77 +0.1 1,277,120 - ABZR87_RS21805 0.77 +0.6 1,277,120 - ABZR87_RS21805 0.77 -0.7 1,277,265 + -0.2 1,277,265 + +0.3 1,277,266 - +0.1 1,277,612 + ABZR87_RS21810 0.29 -0.9 1,277,613 - ABZR87_RS21810 0.29 -0.9 1,278,081 - ABZR87_RS21810 0.88 -1.3 1,278,249 - ABZR87_RS21815 0.18 -0.8 1,278,577 + -0.3 1,278,578 - -1.7 1,278,578 - +1.2 1,278,578 - +0.1 1,278,578 - +2.3 1,278,578 - -0.5 1,278,578 - -0.2 1,278,832 - ABZR87_RS21820 0.26 +0.4 1,278,901 - ABZR87_RS21820 0.34 -0.4 1,278,987 + ABZR87_RS21820 0.43 -1.4 1,278,987 + ABZR87_RS21820 0.43 -0.7 1,278,987 + ABZR87_RS21820 0.43 -0.3 1,278,988 - ABZR87_RS21820 0.43 -0.7
Or see this region's nucleotide sequence