Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19910 and ABZR87_RS19915 overlap by 4 nucleotides ABZR87_RS19915 and ABZR87_RS19920 are separated by 353 nucleotides ABZR87_RS19920 and ABZR87_RS19925 overlap by 4 nucleotides
ABZR87_RS19910: ABZR87_RS19910 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 843,390 to 844,835
_RS19910
ABZR87_RS19915: ABZR87_RS19915 - acetate/propionate family kinase, at 844,832 to 846,013
_RS19915
ABZR87_RS19920: ABZR87_RS19920 - hypothetical protein, at 846,367 to 846,948
_RS19920
ABZR87_RS19925: ABZR87_RS19925 - hypothetical protein, at 846,945 to 847,631
_RS19925
Position (kb) 844
845
846
847 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 843.957 kb on - strand, within ABZR87_RS19910 at 844.217 kb on + strand, within ABZR87_RS19910 at 844.218 kb on - strand, within ABZR87_RS19910 at 844.266 kb on - strand, within ABZR87_RS19910 at 844.402 kb on + strand, within ABZR87_RS19910 at 844.402 kb on + strand, within ABZR87_RS19910 at 844.402 kb on + strand, within ABZR87_RS19910 at 844.403 kb on - strand, within ABZR87_RS19910 at 844.403 kb on - strand, within ABZR87_RS19910 at 844.403 kb on - strand, within ABZR87_RS19910 at 844.686 kb on + strand, within ABZR87_RS19910 at 844.687 kb on - strand, within ABZR87_RS19910 at 844.825 kb on + strand at 844.825 kb on + strand at 844.825 kb on + strand at 844.826 kb on - strand at 844.826 kb on - strand at 845.024 kb on + strand, within ABZR87_RS19915 at 845.024 kb on + strand, within ABZR87_RS19915 at 845.025 kb on - strand, within ABZR87_RS19915 at 845.025 kb on - strand, within ABZR87_RS19915 at 845.127 kb on - strand, within ABZR87_RS19915 at 845.139 kb on + strand, within ABZR87_RS19915 at 845.140 kb on - strand, within ABZR87_RS19915 at 845.177 kb on + strand, within ABZR87_RS19915 at 845.177 kb on + strand, within ABZR87_RS19915 at 845.177 kb on + strand, within ABZR87_RS19915 at 845.177 kb on + strand, within ABZR87_RS19915 at 845.177 kb on + strand, within ABZR87_RS19915 at 845.177 kb on + strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.178 kb on - strand, within ABZR87_RS19915 at 845.179 kb on + strand, within ABZR87_RS19915 at 845.179 kb on + strand, within ABZR87_RS19915 at 845.327 kb on + strand, within ABZR87_RS19915 at 845.328 kb on - strand, within ABZR87_RS19915 at 845.328 kb on - strand, within ABZR87_RS19915 at 845.378 kb on + strand, within ABZR87_RS19915 at 845.379 kb on - strand, within ABZR87_RS19915 at 845.384 kb on + strand, within ABZR87_RS19915 at 845.384 kb on + strand, within ABZR87_RS19915 at 845.384 kb on + strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.580 kb on - strand, within ABZR87_RS19915 at 845.580 kb on - strand, within ABZR87_RS19915 at 845.580 kb on - strand, within ABZR87_RS19915 at 845.735 kb on + strand, within ABZR87_RS19915 at 845.735 kb on + strand, within ABZR87_RS19915 at 845.735 kb on + strand, within ABZR87_RS19915 at 845.736 kb on - strand, within ABZR87_RS19915 at 845.779 kb on - strand, within ABZR87_RS19915 at 845.867 kb on + strand, within ABZR87_RS19915 at 845.867 kb on + strand, within ABZR87_RS19915 at 845.868 kb on - strand, within ABZR87_RS19915 at 846.119 kb on + strand at 846.145 kb on + strand at 846.145 kb on + strand at 846.146 kb on - strand at 846.146 kb on - strand at 846.146 kb on - strand at 846.146 kb on - strand at 846.170 kb on + strand at 846.170 kb on + strand at 846.180 kb on + strand at 846.181 kb on - strand at 846.242 kb on + strand at 846.242 kb on + strand at 846.242 kb on + strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.288 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.290 kb on - strand at 846.290 kb on - strand at 846.290 kb on - strand at 846.291 kb on + strand at 846.291 kb on + strand at 846.291 kb on + strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.309 kb on + strand at 846.310 kb on - strand at 846.384 kb on - strand at 846.598 kb on + strand, within ABZR87_RS19920 at 846.599 kb on - strand, within ABZR87_RS19920 at 846.631 kb on - strand, within ABZR87_RS19920 at 846.631 kb on - strand, within ABZR87_RS19920 at 846.631 kb on - strand, within ABZR87_RS19920 at 846.697 kb on + strand, within ABZR87_RS19920 at 846.698 kb on - strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.909 kb on + strand at 846.909 kb on + strand at 846.909 kb on + strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.925 kb on - strand at 846.972 kb on + strand at 846.972 kb on + strand at 846.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 843,957 - ABZR87_RS19910 0.39 -0.3 844,217 + ABZR87_RS19910 0.57 +0.6 844,218 - ABZR87_RS19910 0.57 -0.2 844,266 - ABZR87_RS19910 0.61 +0.9 844,402 + ABZR87_RS19910 0.70 -2.8 844,402 + ABZR87_RS19910 0.70 -0.9 844,402 + ABZR87_RS19910 0.70 -0.6 844,403 - ABZR87_RS19910 0.70 +0.9 844,403 - ABZR87_RS19910 0.70 +0.0 844,403 - ABZR87_RS19910 0.70 +0.1 844,686 + ABZR87_RS19910 0.90 +0.4 844,687 - ABZR87_RS19910 0.90 +0.9 844,825 + +5.1 844,825 + -1.8 844,825 + -1.0 844,826 - +0.2 844,826 - -0.7 845,024 + ABZR87_RS19915 0.16 +0.5 845,024 + ABZR87_RS19915 0.16 -0.6 845,025 - ABZR87_RS19915 0.16 -0.7 845,025 - ABZR87_RS19915 0.16 -0.6 845,127 - ABZR87_RS19915 0.25 -2.2 845,139 + ABZR87_RS19915 0.26 +0.1 845,140 - ABZR87_RS19915 0.26 +0.6 845,177 + ABZR87_RS19915 0.29 +1.6 845,177 + ABZR87_RS19915 0.29 -0.1 845,177 + ABZR87_RS19915 0.29 -0.3 845,177 + ABZR87_RS19915 0.29 -0.2 845,177 + ABZR87_RS19915 0.29 +0.1 845,177 + ABZR87_RS19915 0.29 +0.7 845,178 - ABZR87_RS19915 0.29 +1.2 845,178 - ABZR87_RS19915 0.29 -0.9 845,178 - ABZR87_RS19915 0.29 +0.4 845,178 - ABZR87_RS19915 0.29 +0.4 845,178 - ABZR87_RS19915 0.29 +0.2 845,178 - ABZR87_RS19915 0.29 +0.6 845,178 - ABZR87_RS19915 0.29 +0.8 845,178 - ABZR87_RS19915 0.29 +0.2 845,178 - ABZR87_RS19915 0.29 -1.1 845,178 - ABZR87_RS19915 0.29 +1.0 845,178 - ABZR87_RS19915 0.29 +0.0 845,179 + ABZR87_RS19915 0.29 -0.4 845,179 + ABZR87_RS19915 0.29 +0.5 845,327 + ABZR87_RS19915 0.42 +0.4 845,328 - ABZR87_RS19915 0.42 -1.2 845,328 - ABZR87_RS19915 0.42 +1.3 845,378 + ABZR87_RS19915 0.46 +0.0 845,379 - ABZR87_RS19915 0.46 +0.9 845,384 + ABZR87_RS19915 0.47 -1.3 845,384 + ABZR87_RS19915 0.47 -1.8 845,384 + ABZR87_RS19915 0.47 -0.1 845,385 - ABZR87_RS19915 0.47 -1.9 845,385 - ABZR87_RS19915 0.47 -0.4 845,385 - ABZR87_RS19915 0.47 +1.3 845,385 - ABZR87_RS19915 0.47 -0.3 845,385 - ABZR87_RS19915 0.47 +1.1 845,385 - ABZR87_RS19915 0.47 +0.4 845,385 - ABZR87_RS19915 0.47 +0.4 845,579 + ABZR87_RS19915 0.63 +0.1 845,579 + ABZR87_RS19915 0.63 +0.5 845,579 + ABZR87_RS19915 0.63 +1.0 845,579 + ABZR87_RS19915 0.63 +0.2 845,579 + ABZR87_RS19915 0.63 -2.4 845,579 + ABZR87_RS19915 0.63 +0.5 845,579 + ABZR87_RS19915 0.63 +0.0 845,579 + ABZR87_RS19915 0.63 +0.1 845,579 + ABZR87_RS19915 0.63 -1.8 845,579 + ABZR87_RS19915 0.63 -4.1 845,579 + ABZR87_RS19915 0.63 -0.3 845,580 - ABZR87_RS19915 0.63 -0.0 845,580 - ABZR87_RS19915 0.63 +1.0 845,580 - ABZR87_RS19915 0.63 +0.3 845,735 + ABZR87_RS19915 0.76 +0.2 845,735 + ABZR87_RS19915 0.76 -0.3 845,735 + ABZR87_RS19915 0.76 +1.0 845,736 - ABZR87_RS19915 0.76 -1.0 845,779 - ABZR87_RS19915 0.80 +1.0 845,867 + ABZR87_RS19915 0.88 -1.5 845,867 + ABZR87_RS19915 0.88 +0.2 845,868 - ABZR87_RS19915 0.88 +1.1 846,119 + +0.8 846,145 + -0.0 846,145 + +0.1 846,146 - -1.0 846,146 - +1.2 846,146 - -1.3 846,146 - +0.4 846,170 + -1.6 846,170 + -1.4 846,180 + -0.8 846,181 - -1.5 846,242 + +1.6 846,242 + -1.0 846,242 + +0.3 846,243 - -0.1 846,243 - -0.0 846,243 - -2.0 846,243 - -1.3 846,243 - +0.0 846,243 - +0.8 846,243 - -0.3 846,243 - +1.4 846,246 + +0.2 846,246 + -0.9 846,246 + +1.8 846,246 + -0.1 846,246 + -1.4 846,246 + -0.3 846,246 + +0.2 846,246 + +0.3 846,246 + -0.7 846,246 + +2.2 846,246 + -1.6 846,246 + +1.1 846,246 + -1.7 846,247 - -1.7 846,247 - -0.1 846,247 - +0.3 846,247 - -0.9 846,247 - +0.1 846,247 - +0.1 846,247 - -1.9 846,247 - -2.7 846,247 - +0.5 846,247 - -0.2 846,247 - -0.0 846,288 + -1.2 846,289 + -1.1 846,289 + -0.5 846,289 + +1.1 846,289 + +0.4 846,289 + +1.5 846,289 + -1.1 846,289 + -0.5 846,289 + -1.1 846,289 + +0.1 846,289 + -0.7 846,289 + -0.7 846,290 - +0.7 846,290 - +0.1 846,290 - +0.6 846,291 + -0.1 846,291 + +4.3 846,291 + -0.2 846,292 - +0.3 846,292 - -1.1 846,292 - +1.5 846,292 - -0.6 846,292 - -1.1 846,292 - -0.9 846,309 + -1.6 846,310 - -0.3 846,384 - -0.6 846,598 + ABZR87_RS19920 0.40 -1.2 846,599 - ABZR87_RS19920 0.40 -1.0 846,631 - ABZR87_RS19920 0.45 -0.4 846,631 - ABZR87_RS19920 0.45 -1.5 846,631 - ABZR87_RS19920 0.45 -0.0 846,697 + ABZR87_RS19920 0.57 -0.5 846,698 - ABZR87_RS19920 0.57 +3.1 846,785 + ABZR87_RS19920 0.72 +6.3 846,785 + ABZR87_RS19920 0.72 -0.2 846,847 + ABZR87_RS19920 0.82 -2.1 846,847 + ABZR87_RS19920 0.82 -0.5 846,848 - ABZR87_RS19920 0.83 +0.0 846,848 - ABZR87_RS19920 0.83 -1.4 846,848 - ABZR87_RS19920 0.83 +0.4 846,848 - ABZR87_RS19920 0.83 -0.6 846,909 + -0.6 846,909 + -0.7 846,909 + -1.6 846,910 - -1.2 846,910 - +0.7 846,910 - +1.3 846,910 - -0.9 846,913 + +0.2 846,913 + -0.2 846,913 + +1.1 846,913 + +1.0 846,913 + +0.6 846,914 - -0.7 846,914 - -0.2 846,914 - +0.3 846,914 - -1.7 846,925 - +0.4 846,972 + +0.1 846,972 + -0.5 846,973 - +1.0
Or see this region's nucleotide sequence