Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19245

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19240 and ABZR87_RS19245 are separated by 449 nucleotidesABZR87_RS19245 and ABZR87_RS19250 are separated by 68 nucleotidesABZR87_RS19250 and ABZR87_RS19255 are separated by 59 nucleotides ABZR87_RS19240: ABZR87_RS19240 - molybdate ABC transporter permease subunit, at 678,678 to 679,364 _RS19240 ABZR87_RS19245: ABZR87_RS19245 - LuxR family transcriptional regulator, at 679,814 to 680,917 _RS19245 ABZR87_RS19250: ABZR87_RS19250 - lytic transglycosylase domain-containing protein, at 680,986 to 681,717 _RS19250 ABZR87_RS19255: ABZR87_RS19255 - type III secretion system export apparatus subunit SctR, at 681,777 to 682,436 _RS19255 Position (kb) 679 680 681Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 678.817 kb on + strand, within ABZR87_RS19240at 678.817 kb on + strand, within ABZR87_RS19240at 678.817 kb on + strand, within ABZR87_RS19240at 678.818 kb on - strand, within ABZR87_RS19240at 679.086 kb on + strand, within ABZR87_RS19240at 679.087 kb on - strand, within ABZR87_RS19240at 679.087 kb on - strand, within ABZR87_RS19240at 679.103 kb on + strand, within ABZR87_RS19240at 679.103 kb on + strand, within ABZR87_RS19240at 679.104 kb on - strand, within ABZR87_RS19240at 679.104 kb on - strand, within ABZR87_RS19240at 679.177 kb on + strand, within ABZR87_RS19240at 679.177 kb on + strand, within ABZR87_RS19240at 679.177 kb on + strand, within ABZR87_RS19240at 679.177 kb on + strand, within ABZR87_RS19240at 679.178 kb on - strand, within ABZR87_RS19240at 679.178 kb on - strand, within ABZR87_RS19240at 679.178 kb on - strand, within ABZR87_RS19240at 679.180 kb on + strand, within ABZR87_RS19240at 679.181 kb on - strand, within ABZR87_RS19240at 679.271 kb on - strand, within ABZR87_RS19240at 679.468 kb on + strandat 679.468 kb on + strandat 679.468 kb on + strandat 679.469 kb on - strandat 679.469 kb on - strandat 679.480 kb on + strandat 679.480 kb on + strandat 679.481 kb on - strandat 679.481 kb on - strandat 679.585 kb on + strandat 679.586 kb on - strandat 679.586 kb on - strandat 679.586 kb on - strandat 679.851 kb on + strandat 679.851 kb on + strandat 679.852 kb on - strandat 679.906 kb on + strandat 679.907 kb on - strandat 680.028 kb on + strand, within ABZR87_RS19245at 680.282 kb on + strand, within ABZR87_RS19245at 680.283 kb on - strand, within ABZR87_RS19245at 680.283 kb on - strand, within ABZR87_RS19245at 680.339 kb on + strand, within ABZR87_RS19245at 680.339 kb on + strand, within ABZR87_RS19245at 680.339 kb on + strand, within ABZR87_RS19245at 680.340 kb on - strand, within ABZR87_RS19245at 680.340 kb on - strand, within ABZR87_RS19245at 680.340 kb on - strand, within ABZR87_RS19245at 680.367 kb on - strand, within ABZR87_RS19245at 680.705 kb on - strand, within ABZR87_RS19245at 680.705 kb on - strand, within ABZR87_RS19245at 680.832 kb on - strandat 680.888 kb on + strandat 680.888 kb on + strandat 680.888 kb on + strandat 680.888 kb on + strandat 680.889 kb on - strandat 680.889 kb on - strandat 680.889 kb on - strandat 681.251 kb on + strand, within ABZR87_RS19250at 681.252 kb on - strand, within ABZR87_RS19250at 681.252 kb on - strand, within ABZR87_RS19250at 681.287 kb on + strand, within ABZR87_RS19250at 681.287 kb on + strand, within ABZR87_RS19250at 681.287 kb on + strand, within ABZR87_RS19250at 681.287 kb on + strand, within ABZR87_RS19250at 681.288 kb on - strand, within ABZR87_RS19250at 681.290 kb on + strand, within ABZR87_RS19250at 681.290 kb on + strand, within ABZR87_RS19250at 681.291 kb on - strand, within ABZR87_RS19250at 681.891 kb on + strand, within ABZR87_RS19255

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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678,817 + ABZR87_RS19240 0.20 +0.6
678,817 + ABZR87_RS19240 0.20 -0.2
678,817 + ABZR87_RS19240 0.20 -0.6
678,818 - ABZR87_RS19240 0.20 +5.2
679,086 + ABZR87_RS19240 0.59 +0.6
679,087 - ABZR87_RS19240 0.60 +0.5
679,087 - ABZR87_RS19240 0.60 -0.2
679,103 + ABZR87_RS19240 0.62 +1.2
679,103 + ABZR87_RS19240 0.62 -0.7
679,104 - ABZR87_RS19240 0.62 +5.0
679,104 - ABZR87_RS19240 0.62 -0.0
679,177 + ABZR87_RS19240 0.73 -0.4
679,177 + ABZR87_RS19240 0.73 +1.9
679,177 + ABZR87_RS19240 0.73 -0.3
679,177 + ABZR87_RS19240 0.73 -1.2
679,178 - ABZR87_RS19240 0.73 -0.9
679,178 - ABZR87_RS19240 0.73 +0.8
679,178 - ABZR87_RS19240 0.73 +1.4
679,180 + ABZR87_RS19240 0.73 -0.7
679,181 - ABZR87_RS19240 0.73 +0.8
679,271 - ABZR87_RS19240 0.86 -0.1
679,468 + +0.9
679,468 + -0.4
679,468 + -1.2
679,469 - -0.9
679,469 - +0.1
679,480 + -1.6
679,480 + +1.2
679,481 - -0.1
679,481 - -1.3
679,585 + +0.2
679,586 - +1.8
679,586 - +1.9
679,586 - -2.3
679,851 + -0.4
679,851 + -1.0
679,852 - +0.1
679,906 + -1.0
679,907 - -0.7
680,028 + ABZR87_RS19245 0.19 -1.0
680,282 + ABZR87_RS19245 0.42 +1.5
680,283 - ABZR87_RS19245 0.42 -1.3
680,283 - ABZR87_RS19245 0.42 +1.1
680,339 + ABZR87_RS19245 0.48 +0.8
680,339 + ABZR87_RS19245 0.48 -0.3
680,339 + ABZR87_RS19245 0.48 +0.8
680,340 - ABZR87_RS19245 0.48 +0.6
680,340 - ABZR87_RS19245 0.48 -0.6
680,340 - ABZR87_RS19245 0.48 -0.3
680,367 - ABZR87_RS19245 0.50 -0.8
680,705 - ABZR87_RS19245 0.81 +0.3
680,705 - ABZR87_RS19245 0.81 +0.4
680,832 - -0.3
680,888 + -0.2
680,888 + -0.9
680,888 + +1.9
680,888 + -1.0
680,889 - -0.1
680,889 - -0.6
680,889 - +0.0
681,251 + ABZR87_RS19250 0.36 -0.0
681,252 - ABZR87_RS19250 0.36 +1.6
681,252 - ABZR87_RS19250 0.36 +0.6
681,287 + ABZR87_RS19250 0.41 +0.2
681,287 + ABZR87_RS19250 0.41 +0.6
681,287 + ABZR87_RS19250 0.41 +0.2
681,287 + ABZR87_RS19250 0.41 -0.2
681,288 - ABZR87_RS19250 0.41 +1.2
681,290 + ABZR87_RS19250 0.42 +0.4
681,290 + ABZR87_RS19250 0.42 -0.3
681,291 - ABZR87_RS19250 0.42 +0.6
681,891 + ABZR87_RS19255 0.17 -0.9

Or see this region's nucleotide sequence