Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17730

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17720 and ABZR87_RS17725 overlap by 11 nucleotidesABZR87_RS17725 and ABZR87_RS17730 are separated by 51 nucleotidesABZR87_RS17730 and ABZR87_RS17735 are separated by 228 nucleotides ABZR87_RS17720: ABZR87_RS17720 - ABC transporter permease, at 338,346 to 339,242 _RS17720 ABZR87_RS17725: ABZR87_RS17725 - ABC transporter ATP-binding protein, at 339,232 to 340,026 _RS17725 ABZR87_RS17730: ABZR87_RS17730 - GntR family transcriptional regulator, at 340,078 to 340,800 _RS17730 ABZR87_RS17735: ABZR87_RS17735 - ABC transporter substrate-binding protein, at 341,029 to 342,078 _RS17735 Position (kb) 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 339.112 kb on + strand, within ABZR87_RS17720at 339.182 kb on - strandat 339.182 kb on - strandat 339.182 kb on - strandat 339.457 kb on + strand, within ABZR87_RS17725at 339.644 kb on + strand, within ABZR87_RS17725at 339.645 kb on - strand, within ABZR87_RS17725at 339.645 kb on - strand, within ABZR87_RS17725at 339.867 kb on + strand, within ABZR87_RS17725at 339.867 kb on + strand, within ABZR87_RS17725at 339.868 kb on - strand, within ABZR87_RS17725at 339.896 kb on + strand, within ABZR87_RS17725at 339.897 kb on - strand, within ABZR87_RS17725at 339.897 kb on - strand, within ABZR87_RS17725at 339.897 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 340.070 kb on - strandat 340.154 kb on + strand, within ABZR87_RS17730at 340.220 kb on + strand, within ABZR87_RS17730at 340.221 kb on - strand, within ABZR87_RS17730at 340.221 kb on - strand, within ABZR87_RS17730at 340.221 kb on - strand, within ABZR87_RS17730at 340.293 kb on - strand, within ABZR87_RS17730at 340.293 kb on - strand, within ABZR87_RS17730at 340.293 kb on - strand, within ABZR87_RS17730at 340.302 kb on - strand, within ABZR87_RS17730at 340.676 kb on + strand, within ABZR87_RS17730at 340.676 kb on + strand, within ABZR87_RS17730at 340.676 kb on + strand, within ABZR87_RS17730at 340.773 kb on - strandat 340.822 kb on - strandat 340.822 kb on - strandat 340.829 kb on + strandat 340.831 kb on + strandat 340.832 kb on - strandat 340.847 kb on - strandat 340.847 kb on - strandat 340.847 kb on - strandat 340.872 kb on - strandat 340.872 kb on - strandat 340.924 kb on - strandat 340.970 kb on + strandat 340.970 kb on + strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.973 kb on + strandat 340.973 kb on + strandat 340.973 kb on + strandat 340.973 kb on + strandat 340.974 kb on - strandat 340.974 kb on - strandat 341.216 kb on - strand, within ABZR87_RS17735at 341.216 kb on - strand, within ABZR87_RS17735at 341.245 kb on + strand, within ABZR87_RS17735at 341.246 kb on - strand, within ABZR87_RS17735at 341.266 kb on + strand, within ABZR87_RS17735at 341.296 kb on + strand, within ABZR87_RS17735at 341.296 kb on + strand, within ABZR87_RS17735at 341.296 kb on + strand, within ABZR87_RS17735at 341.297 kb on - strand, within ABZR87_RS17735at 341.297 kb on - strand, within ABZR87_RS17735at 341.393 kb on - strand, within ABZR87_RS17735at 341.464 kb on + strand, within ABZR87_RS17735at 341.465 kb on - strand, within ABZR87_RS17735at 341.465 kb on - strand, within ABZR87_RS17735at 341.465 kb on - strand, within ABZR87_RS17735at 341.737 kb on + strand, within ABZR87_RS17735at 341.774 kb on - strand, within ABZR87_RS17735

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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339,112 + ABZR87_RS17720 0.85 +2.0
339,182 - +0.5
339,182 - +0.6
339,182 - +0.9
339,457 + ABZR87_RS17725 0.28 -1.3
339,644 + ABZR87_RS17725 0.52 +1.5
339,645 - ABZR87_RS17725 0.52 -0.3
339,645 - ABZR87_RS17725 0.52 -1.2
339,867 + ABZR87_RS17725 0.80 +1.7
339,867 + ABZR87_RS17725 0.80 +0.3
339,868 - ABZR87_RS17725 0.80 -1.8
339,896 + ABZR87_RS17725 0.84 -0.1
339,897 - ABZR87_RS17725 0.84 -0.5
339,897 - ABZR87_RS17725 0.84 -1.0
339,897 - ABZR87_RS17725 0.84 +1.3
339,933 - ABZR87_RS17725 0.88 -1.6
339,933 - ABZR87_RS17725 0.88 -0.2
339,933 - ABZR87_RS17725 0.88 -0.6
339,933 - ABZR87_RS17725 0.88 +0.4
339,933 - ABZR87_RS17725 0.88 +0.4
340,070 - -0.5
340,154 + ABZR87_RS17730 0.11 -1.4
340,220 + ABZR87_RS17730 0.20 -1.6
340,221 - ABZR87_RS17730 0.20 +0.6
340,221 - ABZR87_RS17730 0.20 -0.8
340,221 - ABZR87_RS17730 0.20 -0.8
340,293 - ABZR87_RS17730 0.30 -1.2
340,293 - ABZR87_RS17730 0.30 -0.8
340,293 - ABZR87_RS17730 0.30 -1.5
340,302 - ABZR87_RS17730 0.31 +0.0
340,676 + ABZR87_RS17730 0.83 -1.3
340,676 + ABZR87_RS17730 0.83 -1.2
340,676 + ABZR87_RS17730 0.83 -1.8
340,773 - -1.1
340,822 - +1.4
340,822 - +1.9
340,829 + -1.6
340,831 + +2.7
340,832 - +0.0
340,847 - -0.5
340,847 - -0.3
340,847 - +1.1
340,872 - +0.2
340,872 - +0.1
340,924 - -0.1
340,970 + +0.7
340,970 + +0.1
340,971 - +2.7
340,971 - +0.8
340,971 - +0.7
340,973 + -0.3
340,973 + -0.6
340,973 + -0.8
340,973 + -0.3
340,974 - +0.9
340,974 - -0.5
341,216 - ABZR87_RS17735 0.18 -1.6
341,216 - ABZR87_RS17735 0.18 +0.5
341,245 + ABZR87_RS17735 0.21 +1.0
341,246 - ABZR87_RS17735 0.21 +0.9
341,266 + ABZR87_RS17735 0.23 -0.3
341,296 + ABZR87_RS17735 0.25 +0.1
341,296 + ABZR87_RS17735 0.25 -0.5
341,296 + ABZR87_RS17735 0.25 -0.1
341,297 - ABZR87_RS17735 0.26 -1.1
341,297 - ABZR87_RS17735 0.26 -0.4
341,393 - ABZR87_RS17735 0.35 +0.7
341,464 + ABZR87_RS17735 0.41 -0.1
341,465 - ABZR87_RS17735 0.42 +0.2
341,465 - ABZR87_RS17735 0.42 -0.3
341,465 - ABZR87_RS17735 0.42 +1.8
341,737 + ABZR87_RS17735 0.67 -0.3
341,774 - ABZR87_RS17735 0.71 +1.2

Or see this region's nucleotide sequence