Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17240

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17235 and ABZR87_RS17240 are separated by 125 nucleotidesABZR87_RS17240 and ABZR87_RS17245 are separated by 77 nucleotides ABZR87_RS17235: ABZR87_RS17235 - alkyl hydroperoxide reductase subunit C, at 224,996 to 225,559 _RS17235 ABZR87_RS17240: ABZR87_RS17240 - alkyl hydroperoxide reductase subunit F, at 225,685 to 227,259 _RS17240 ABZR87_RS17245: ABZR87_RS17245 - LysR substrate-binding domain-containing protein, at 227,337 to 228,224 _RS17245 Position (kb) 225 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2 3at 224.696 kb on + strandat 224.696 kb on + strandat 224.696 kb on + strandat 224.697 kb on - strandat 224.697 kb on - strandat 224.697 kb on - strandat 224.697 kb on - strandat 224.697 kb on - strandat 224.776 kb on + strandat 224.815 kb on - strandat 224.815 kb on - strandat 224.824 kb on + strandat 224.824 kb on + strandat 224.916 kb on + strandat 224.950 kb on + strandat 224.950 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.996 kb on - strandat 225.010 kb on + strandat 225.010 kb on + strandat 225.010 kb on + strandat 225.011 kb on - strandat 225.011 kb on - strandat 225.011 kb on - strandat 225.167 kb on + strand, within ABZR87_RS17235at 225.167 kb on + strand, within ABZR87_RS17235at 225.167 kb on + strand, within ABZR87_RS17235at 225.168 kb on - strand, within ABZR87_RS17235at 225.168 kb on - strand, within ABZR87_RS17235at 225.168 kb on - strand, within ABZR87_RS17235at 225.200 kb on + strand, within ABZR87_RS17235at 225.200 kb on + strand, within ABZR87_RS17235at 225.200 kb on + strand, within ABZR87_RS17235at 225.201 kb on - strand, within ABZR87_RS17235at 225.201 kb on - strand, within ABZR87_RS17235at 225.201 kb on - strand, within ABZR87_RS17235at 225.557 kb on + strandat 225.557 kb on + strandat 225.558 kb on - strandat 225.558 kb on - strandat 225.558 kb on - strandat 225.558 kb on - strandat 225.558 kb on - strandat 225.565 kb on - strandat 225.565 kb on - strandat 225.625 kb on + strandat 225.626 kb on - strandat 225.626 kb on - strandat 225.671 kb on + strandat 225.672 kb on - strandat 225.721 kb on + strandat 225.722 kb on - strandat 225.982 kb on + strand, within ABZR87_RS17240at 225.982 kb on + strand, within ABZR87_RS17240at 225.983 kb on - strand, within ABZR87_RS17240at 225.983 kb on - strand, within ABZR87_RS17240at 226.027 kb on - strand, within ABZR87_RS17240at 226.054 kb on + strand, within ABZR87_RS17240at 226.054 kb on + strand, within ABZR87_RS17240at 226.054 kb on + strand, within ABZR87_RS17240at 226.054 kb on + strand, within ABZR87_RS17240at 226.054 kb on + strand, within ABZR87_RS17240at 226.054 kb on + strand, within ABZR87_RS17240at 226.054 kb on + strand, within ABZR87_RS17240at 226.055 kb on - strand, within ABZR87_RS17240at 226.055 kb on - strand, within ABZR87_RS17240at 226.055 kb on - strand, within ABZR87_RS17240at 226.160 kb on - strand, within ABZR87_RS17240at 226.160 kb on - strand, within ABZR87_RS17240at 226.160 kb on - strand, within ABZR87_RS17240at 226.372 kb on + strand, within ABZR87_RS17240at 226.693 kb on + strand, within ABZR87_RS17240at 226.694 kb on - strand, within ABZR87_RS17240at 226.714 kb on + strand, within ABZR87_RS17240at 226.714 kb on + strand, within ABZR87_RS17240at 226.715 kb on - strand, within ABZR87_RS17240at 226.715 kb on - strand, within ABZR87_RS17240at 226.715 kb on - strand, within ABZR87_RS17240at 226.969 kb on + strand, within ABZR87_RS17240at 226.969 kb on + strand, within ABZR87_RS17240at 227.165 kb on - strandat 227.282 kb on - strandat 227.301 kb on + strandat 227.302 kb on - strandat 227.587 kb on + strand, within ABZR87_RS17245at 227.587 kb on + strand, within ABZR87_RS17245at 227.588 kb on - strand, within ABZR87_RS17245at 227.588 kb on - strand, within ABZR87_RS17245at 227.644 kb on + strand, within ABZR87_RS17245at 227.821 kb on + strand, within ABZR87_RS17245at 227.821 kb on + strand, within ABZR87_RS17245

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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224,696 + +0.3
224,696 + +0.3
224,696 + -1.1
224,697 - -0.3
224,697 - -1.3
224,697 - +0.1
224,697 - +0.6
224,697 - +0.2
224,776 + +0.4
224,815 - +0.7
224,815 - -1.6
224,824 + +0.8
224,824 + +2.1
224,916 + +0.3
224,950 + -1.2
224,950 + +1.8
224,995 + +1.4
224,995 + -1.6
224,995 + +1.2
224,995 + -0.9
224,995 + +0.4
224,995 + -0.4
224,995 + +0.4
224,995 + -1.2
224,995 + -1.2
224,996 - -1.6
225,010 + +1.8
225,010 + -1.2
225,010 + -1.2
225,011 - +0.4
225,011 - +0.6
225,011 - +0.2
225,167 + ABZR87_RS17235 0.30 -1.1
225,167 + ABZR87_RS17235 0.30 -0.8
225,167 + ABZR87_RS17235 0.30 -0.2
225,168 - ABZR87_RS17235 0.30 -0.0
225,168 - ABZR87_RS17235 0.30 -2.0
225,168 - ABZR87_RS17235 0.30 +0.4
225,200 + ABZR87_RS17235 0.36 -0.8
225,200 + ABZR87_RS17235 0.36 +0.4
225,200 + ABZR87_RS17235 0.36 +2.0
225,201 - ABZR87_RS17235 0.36 +0.9
225,201 - ABZR87_RS17235 0.36 +0.4
225,201 - ABZR87_RS17235 0.36 -2.0
225,557 + -0.2
225,557 + -1.1
225,558 - -2.0
225,558 - -1.5
225,558 - -1.5
225,558 - +1.0
225,558 - -0.7
225,565 - -0.5
225,565 - +0.6
225,625 + -0.3
225,626 - -0.8
225,626 - +0.4
225,671 + +0.5
225,672 - +0.4
225,721 + +1.5
225,722 - +1.3
225,982 + ABZR87_RS17240 0.19 +1.2
225,982 + ABZR87_RS17240 0.19 -1.4
225,983 - ABZR87_RS17240 0.19 -0.8
225,983 - ABZR87_RS17240 0.19 +2.8
226,027 - ABZR87_RS17240 0.22 +2.8
226,054 + ABZR87_RS17240 0.23 -0.8
226,054 + ABZR87_RS17240 0.23 +1.0
226,054 + ABZR87_RS17240 0.23 +0.8
226,054 + ABZR87_RS17240 0.23 -1.0
226,054 + ABZR87_RS17240 0.23 -1.4
226,054 + ABZR87_RS17240 0.23 -1.3
226,054 + ABZR87_RS17240 0.23 -0.4
226,055 - ABZR87_RS17240 0.23 -1.0
226,055 - ABZR87_RS17240 0.23 +0.3
226,055 - ABZR87_RS17240 0.23 -0.4
226,160 - ABZR87_RS17240 0.30 -1.2
226,160 - ABZR87_RS17240 0.30 -2.1
226,160 - ABZR87_RS17240 0.30 +1.8
226,372 + ABZR87_RS17240 0.44 +0.0
226,693 + ABZR87_RS17240 0.64 +1.2
226,694 - ABZR87_RS17240 0.64 -1.0
226,714 + ABZR87_RS17240 0.65 +1.5
226,714 + ABZR87_RS17240 0.65 -0.4
226,715 - ABZR87_RS17240 0.65 +0.0
226,715 - ABZR87_RS17240 0.65 +1.2
226,715 - ABZR87_RS17240 0.65 +0.8
226,969 + ABZR87_RS17240 0.82 -1.4
226,969 + ABZR87_RS17240 0.82 -0.8
227,165 - +0.4
227,282 - -0.5
227,301 + +0.0
227,302 - -1.4
227,587 + ABZR87_RS17245 0.28 +0.1
227,587 + ABZR87_RS17245 0.28 -0.2
227,588 - ABZR87_RS17245 0.28 -0.9
227,588 - ABZR87_RS17245 0.28 -0.1
227,644 + ABZR87_RS17245 0.35 -0.0
227,821 + ABZR87_RS17245 0.55 -0.1
227,821 + ABZR87_RS17245 0.55 +0.1

Or see this region's nucleotide sequence