Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14580

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14575 and ABZR87_RS14580 are separated by 352 nucleotidesABZR87_RS14580 and ABZR87_RS14585 are separated by 117 nucleotides ABZR87_RS14575: ABZR87_RS14575 - GntR family transcriptional regulator, at 3,078,478 to 3,079,287 _RS14575 ABZR87_RS14580: ABZR87_RS14580 - malate dehydrogenase, at 3,079,640 to 3,080,626 _RS14580 ABZR87_RS14585: ABZR87_RS14585 - CoA ester lyase, at 3,080,744 to 3,081,724 _RS14585 Position (kb) 3079 3080 3081Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3078.702 kb on - strand, within ABZR87_RS14575at 3078.702 kb on - strand, within ABZR87_RS14575at 3078.702 kb on - strand, within ABZR87_RS14575at 3078.898 kb on + strand, within ABZR87_RS14575at 3078.898 kb on + strand, within ABZR87_RS14575at 3078.899 kb on - strand, within ABZR87_RS14575at 3078.915 kb on - strand, within ABZR87_RS14575at 3079.076 kb on + strand, within ABZR87_RS14575at 3079.076 kb on + strand, within ABZR87_RS14575at 3079.076 kb on + strand, within ABZR87_RS14575at 3079.077 kb on - strand, within ABZR87_RS14575at 3079.264 kb on + strandat 3079.264 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.288 kb on - strandat 3079.288 kb on - strandat 3079.288 kb on - strandat 3079.288 kb on - strandat 3079.288 kb on - strandat 3079.335 kb on + strandat 3079.354 kb on + strandat 3079.355 kb on - strandat 3079.397 kb on - strandat 3079.397 kb on - strandat 3079.492 kb on + strandat 3079.621 kb on + strandat 3080.639 kb on - strandat 3080.685 kb on + strandat 3080.735 kb on + strandat 3080.878 kb on + strand, within ABZR87_RS14585at 3081.068 kb on + strand, within ABZR87_RS14585at 3081.068 kb on + strand, within ABZR87_RS14585at 3081.069 kb on - strand, within ABZR87_RS14585at 3081.186 kb on - strand, within ABZR87_RS14585at 3081.218 kb on - strand, within ABZR87_RS14585at 3081.231 kb on + strand, within ABZR87_RS14585at 3081.232 kb on - strand, within ABZR87_RS14585at 3081.416 kb on - strand, within ABZR87_RS14585at 3081.473 kb on + strand, within ABZR87_RS14585

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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3,078,702 - ABZR87_RS14575 0.28 -1.1
3,078,702 - ABZR87_RS14575 0.28 +0.6
3,078,702 - ABZR87_RS14575 0.28 +0.2
3,078,898 + ABZR87_RS14575 0.52 +0.7
3,078,898 + ABZR87_RS14575 0.52 +0.3
3,078,899 - ABZR87_RS14575 0.52 -1.0
3,078,915 - ABZR87_RS14575 0.54 -0.8
3,079,076 + ABZR87_RS14575 0.74 -0.6
3,079,076 + ABZR87_RS14575 0.74 +2.9
3,079,076 + ABZR87_RS14575 0.74 +0.1
3,079,077 - ABZR87_RS14575 0.74 -1.7
3,079,264 + -1.3
3,079,264 + -0.9
3,079,287 + +0.2
3,079,287 + +0.1
3,079,287 + +1.9
3,079,287 + -0.1
3,079,287 + -1.1
3,079,287 + +1.0
3,079,288 - +1.2
3,079,288 - -1.0
3,079,288 - -0.8
3,079,288 - +0.6
3,079,288 - +1.9
3,079,335 + -0.3
3,079,354 + +2.9
3,079,355 - +0.2
3,079,397 - -0.1
3,079,397 - -2.3
3,079,492 + -1.0
3,079,621 + -1.5
3,080,639 - +0.6
3,080,685 + +0.4
3,080,735 + -0.5
3,080,878 + ABZR87_RS14585 0.14 -0.0
3,081,068 + ABZR87_RS14585 0.33 -1.0
3,081,068 + ABZR87_RS14585 0.33 -0.6
3,081,069 - ABZR87_RS14585 0.33 +0.4
3,081,186 - ABZR87_RS14585 0.45 -0.5
3,081,218 - ABZR87_RS14585 0.48 +0.4
3,081,231 + ABZR87_RS14585 0.50 -0.8
3,081,232 - ABZR87_RS14585 0.50 -0.6
3,081,416 - ABZR87_RS14585 0.69 +0.4
3,081,473 + ABZR87_RS14585 0.74 +2.1

Or see this region's nucleotide sequence