Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12255

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
2,597,510	+				+3.3
2,597,510	+				-0.1
2,597,511	-				-2.5
2,597,629	+				+1.0
2,597,651	+				+0.5
2,597,652	-				-0.2
2,597,724	+		ABZR87_RS12250	0.17	+1.9
2,597,724	+		ABZR87_RS12250	0.17	+0.8
2,597,724	+		ABZR87_RS12250	0.17	-0.0
2,597,725	-		ABZR87_RS12250	0.17	-1.3
2,597,873	+		ABZR87_RS12250	0.36	-1.1
2,597,874	-		ABZR87_RS12250	0.36	-0.3
2,597,942	+		ABZR87_RS12250	0.44	-1.2
2,597,942	+		ABZR87_RS12250	0.44	+0.5
2,597,942	+		ABZR87_RS12250	0.44	-1.5
2,597,942	+		ABZR87_RS12250	0.44	-0.6
2,597,942	+		ABZR87_RS12250	0.44	-1.1
2,597,942	+		ABZR87_RS12250	0.44	-1.2
2,597,943	-		ABZR87_RS12250	0.44	+0.6
2,597,943	-		ABZR87_RS12250	0.44	-1.1
2,597,943	-		ABZR87_RS12250	0.44	+0.9
2,597,943	-		ABZR87_RS12250	0.44	-0.5
2,597,943	-		ABZR87_RS12250	0.44	-1.3
2,597,943	-		ABZR87_RS12250	0.44	+0.0
2,597,943	-		ABZR87_RS12250	0.44	+1.1
2,597,943	-		ABZR87_RS12250	0.44	-1.2
2,597,943	-		ABZR87_RS12250	0.44	-0.4
2,597,943	-		ABZR87_RS12250	0.44	+1.0
2,597,943	-		ABZR87_RS12250	0.44	+3.4
2,598,190	-		ABZR87_RS12250	0.75	+0.2
2,598,190	-		ABZR87_RS12250	0.75	+1.7
2,598,190	-		ABZR87_RS12250	0.75	-1.0
2,598,311	+				+0.6
2,598,312	-				-0.3
2,598,387	-				-0.1
2,598,387	-				-1.8
2,598,641	+				+0.9
2,598,641	+				-1.1
2,598,642	-				-0.3
2,598,642	-				-1.3
2,598,642	-				-0.2
2,598,642	-				-0.2
2,598,651	-		ABZR87_RS12255	0.10	+0.5
2,598,651	-		ABZR87_RS12255	0.10	-0.9
2,598,651	-		ABZR87_RS12255	0.10	+0.3
2,598,684	-		ABZR87_RS12255	0.12	+0.5
2,598,685	+		ABZR87_RS12255	0.12	+1.7
2,598,685	+		ABZR87_RS12255	0.12	-1.8
2,598,685	+		ABZR87_RS12255	0.12	+1.9
2,598,686	-		ABZR87_RS12255	0.12	+0.5
2,598,848	+		ABZR87_RS12255	0.19	-1.0
2,598,848	+		ABZR87_RS12255	0.19	+1.2
2,598,849	-		ABZR87_RS12255	0.19	-3.1
2,598,863	+		ABZR87_RS12255	0.19	+0.2
2,598,884	+		ABZR87_RS12255	0.20	-1.2
2,598,884	+		ABZR87_RS12255	0.20	-1.5
2,598,884	+		ABZR87_RS12255	0.20	+2.1
2,598,884	+		ABZR87_RS12255	0.20	-0.7
2,598,885	-		ABZR87_RS12255	0.20	-0.6
2,598,929	+		ABZR87_RS12255	0.22	-0.6
2,598,929	+		ABZR87_RS12255	0.22	+0.4
2,598,929	+		ABZR87_RS12255	0.22	-1.2
2,598,929	+		ABZR87_RS12255	0.22	-2.6
2,598,930	-		ABZR87_RS12255	0.22	-1.7
2,598,930	-		ABZR87_RS12255	0.22	+0.4
2,598,930	-		ABZR87_RS12255	0.22	-1.6
2,598,944	+		ABZR87_RS12255	0.23	-1.2
2,598,944	+		ABZR87_RS12255	0.23	-2.6
2,598,944	+		ABZR87_RS12255	0.23	+1.3
2,598,944	+		ABZR87_RS12255	0.23	-0.3
2,598,945	-		ABZR87_RS12255	0.23	-0.3
2,599,136	+		ABZR87_RS12255	0.31	-0.5
2,599,136	+		ABZR87_RS12255	0.31	-1.1
2,599,136	+		ABZR87_RS12255	0.31	+0.1
2,599,136	+		ABZR87_RS12255	0.31	-0.7
2,599,136	+		ABZR87_RS12255	0.31	+0.1
2,599,137	-		ABZR87_RS12255	0.31	-0.5
2,599,397	+		ABZR87_RS12255	0.42	-0.1
2,599,397	+		ABZR87_RS12255	0.42	-0.3
2,599,500	-		ABZR87_RS12255	0.46	+0.4
2,599,514	+		ABZR87_RS12255	0.47	-0.7
2,599,514	+		ABZR87_RS12255	0.47	+1.0
2,599,514	+		ABZR87_RS12255	0.47	-0.2
2,599,514	+		ABZR87_RS12255	0.47	-1.0
2,599,514	+		ABZR87_RS12255	0.47	-0.0
2,599,514	+		ABZR87_RS12255	0.47	+0.6
2,599,515	-		ABZR87_RS12255	0.47	+1.0
2,599,515	-		ABZR87_RS12255	0.47	+0.0
2,599,515	-		ABZR87_RS12255	0.47	-2.1
2,599,515	-		ABZR87_RS12255	0.47	-1.3
2,599,515	-		ABZR87_RS12255	0.47	-3.2
2,599,538	+		ABZR87_RS12255	0.48	-1.2
2,599,539	-		ABZR87_RS12255	0.48	+4.4
2,599,631	+		ABZR87_RS12255	0.51	+1.1
2,599,631	+		ABZR87_RS12255	0.51	-0.3
2,599,631	+		ABZR87_RS12255	0.51	-0.5
2,599,631	+		ABZR87_RS12255	0.51	-0.7
2,599,631	+		ABZR87_RS12255	0.51	+0.5
2,599,631	+		ABZR87_RS12255	0.51	-0.7
2,599,631	+		ABZR87_RS12255	0.51	+2.8
2,599,631	+		ABZR87_RS12255	0.51	-0.7
2,599,631	+		ABZR87_RS12255	0.51	+0.7
2,599,631	+		ABZR87_RS12255	0.51	-0.3
2,599,632	-		ABZR87_RS12255	0.52	+0.0
2,599,632	-		ABZR87_RS12255	0.52	-1.6
2,599,632	-		ABZR87_RS12255	0.52	-0.7
2,599,632	-		ABZR87_RS12255	0.52	-1.5
2,599,661	+		ABZR87_RS12255	0.53	-0.4
2,599,709	+		ABZR87_RS12255	0.55	-0.0
2,599,709	+		ABZR87_RS12255	0.55	+1.6
2,599,709	+		ABZR87_RS12255	0.55	-0.7
2,599,709	+		ABZR87_RS12255	0.55	-0.5
2,599,709	+		ABZR87_RS12255	0.55	+0.5
2,599,710	-		ABZR87_RS12255	0.55	-0.8
2,599,728	-		ABZR87_RS12255	0.56	-1.1
2,599,752	-		ABZR87_RS12255	0.57	-0.2
2,599,752	-		ABZR87_RS12255	0.57	-2.0
2,599,752	-		ABZR87_RS12255	0.57	-0.4
2,599,790	+		ABZR87_RS12255	0.58	+0.1
2,599,790	+		ABZR87_RS12255	0.58	-0.4
2,599,791	-		ABZR87_RS12255	0.58	-1.3
2,599,791	-		ABZR87_RS12255	0.58	-0.6
2,599,791	-		ABZR87_RS12255	0.58	+2.6
2,599,791	-		ABZR87_RS12255	0.58	-0.9
2,599,812	+		ABZR87_RS12255	0.59	-0.0
2,599,812	+		ABZR87_RS12255	0.59	-0.8
2,599,812	+		ABZR87_RS12255	0.59	-0.9
2,599,813	-		ABZR87_RS12255	0.59	-0.4
2,599,813	-		ABZR87_RS12255	0.59	-1.2
2,600,111	+		ABZR87_RS12255	0.72	+0.0
2,600,112	-		ABZR87_RS12255	0.72	-0.9
2,600,112	-		ABZR87_RS12255	0.72	+0.2
2,600,112	-		ABZR87_RS12255	0.72	-0.5
2,600,112	-		ABZR87_RS12255	0.72	-0.1
2,600,120	+		ABZR87_RS12255	0.72	+0.4
2,600,120	+		ABZR87_RS12255	0.72	-0.7
2,600,120	+		ABZR87_RS12255	0.72	+0.6
2,600,120	+		ABZR87_RS12255	0.72	-2.2
2,600,120	+		ABZR87_RS12255	0.72	+0.2
2,600,120	+		ABZR87_RS12255	0.72	-1.5
2,600,120	+		ABZR87_RS12255	0.72	+0.3
2,600,120	+		ABZR87_RS12255	0.72	+0.6
2,600,121	-		ABZR87_RS12255	0.72	-0.2
2,600,121	-		ABZR87_RS12255	0.72	+1.2
2,600,121	-		ABZR87_RS12255	0.72	-0.0
2,600,273	+		ABZR87_RS12255	0.78	-0.5
2,600,273	+		ABZR87_RS12255	0.78	-0.8
2,600,273	+		ABZR87_RS12255	0.78	-0.6
2,600,274	-		ABZR87_RS12255	0.79	-1.5
2,600,274	-		ABZR87_RS12255	0.79	-0.3
2,600,274	-		ABZR87_RS12255	0.79	-1.0
2,600,274	-		ABZR87_RS12255	0.79	-3.4
2,600,660	+				-0.7
2,600,660	+				-0.6
2,600,660	+				+2.6
2,600,661	-				-1.5
2,600,693	+				-1.3
2,600,693	+				+1.2
2,600,913	+		ABZR87_RS12260	0.21	+2.8
2,600,914	-		ABZR87_RS12260	0.21	+0.6
2,601,088	-		ABZR87_RS12260	0.54	-2.3
2,601,268	+		ABZR87_RS12260	0.88	+0.2
2,601,429	-				+0.3
2,601,435	+				-0.1
2,601,520	+				-0.4
2,601,521	-				-0.3
2,601,635	+				+0.5
2,601,635	+				-0.2
2,601,644	+				-0.9
2,601,645	-				+1.0
2,601,653	+				+0.7
2,601,653	+				-1.8
2,601,653	+				+0.3
2,601,653	+				-1.1
2,601,654	-				-1.0
2,601,655	+				-0.5
2,601,655	+				+0.3
2,601,656	-				-0.4
2,601,657	+				+1.6
2,601,657	+				-0.4
2,601,657	+				-3.7
2,601,657	+				-0.0
2,601,657	+				+1.1
2,601,657	+				-0.5
2,601,657	+				+1.1
2,601,657	+				-0.1
2,601,657	+				-0.4
2,601,658	-				-0.3
2,601,658	-				-0.0
2,601,658	-				-0.8
2,601,658	-				+0.3
2,601,658	-				-0.5
2,601,658	-				+0.5
2,601,663	+				-0.8
2,601,664	-				+0.6
2,601,664	-				-0.2
2,601,689	+				+0.7
2,601,689	+				+0.2