Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09165

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09160 and ABZR87_RS09165 are separated by 1 nucleotidesABZR87_RS09165 and ABZR87_RS09170 are separated by 21 nucleotides ABZR87_RS09160: ABZR87_RS09160 - GMC family oxidoreductase, at 1,937,587 to 1,939,197 _RS09160 ABZR87_RS09165: ABZR87_RS09165 - cytochrome c, at 1,939,199 to 1,940,482 _RS09165 ABZR87_RS09170: ABZR87_RS09170 - AsmA family protein, at 1,940,504 to 1,942,801 _RS09170 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.259 kb on + strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.260 kb on - strand, within ABZR87_RS09160at 1938.559 kb on + strand, within ABZR87_RS09160at 1938.559 kb on + strand, within ABZR87_RS09160at 1938.559 kb on + strand, within ABZR87_RS09160at 1938.559 kb on + strand, within ABZR87_RS09160at 1938.560 kb on - strand, within ABZR87_RS09160at 1938.775 kb on + strand, within ABZR87_RS09160at 1938.775 kb on + strand, within ABZR87_RS09160at 1938.776 kb on - strand, within ABZR87_RS09160at 1938.776 kb on - strand, within ABZR87_RS09160at 1938.883 kb on + strand, within ABZR87_RS09160at 1938.883 kb on + strand, within ABZR87_RS09160at 1938.883 kb on + strand, within ABZR87_RS09160at 1938.883 kb on + strand, within ABZR87_RS09160at 1938.884 kb on - strand, within ABZR87_RS09160at 1938.884 kb on - strand, within ABZR87_RS09160at 1938.884 kb on - strand, within ABZR87_RS09160at 1938.898 kb on + strand, within ABZR87_RS09160at 1938.899 kb on - strand, within ABZR87_RS09160at 1938.899 kb on - strand, within ABZR87_RS09160at 1938.899 kb on - strand, within ABZR87_RS09160at 1938.921 kb on + strand, within ABZR87_RS09160at 1938.921 kb on + strand, within ABZR87_RS09160at 1938.922 kb on - strand, within ABZR87_RS09160at 1938.922 kb on - strand, within ABZR87_RS09160at 1938.922 kb on - strand, within ABZR87_RS09160at 1938.922 kb on - strand, within ABZR87_RS09160at 1938.922 kb on - strand, within ABZR87_RS09160at 1938.934 kb on + strand, within ABZR87_RS09160at 1938.934 kb on + strand, within ABZR87_RS09160at 1938.934 kb on + strand, within ABZR87_RS09160at 1939.304 kb on + strandat 1939.305 kb on - strandat 1939.305 kb on - strandat 1939.305 kb on - strandat 1939.339 kb on + strand, within ABZR87_RS09165at 1939.340 kb on - strand, within ABZR87_RS09165at 1939.406 kb on + strand, within ABZR87_RS09165at 1939.406 kb on + strand, within ABZR87_RS09165at 1939.407 kb on - strand, within ABZR87_RS09165at 1939.417 kb on + strand, within ABZR87_RS09165at 1939.417 kb on + strand, within ABZR87_RS09165at 1939.417 kb on + strand, within ABZR87_RS09165at 1939.418 kb on - strand, within ABZR87_RS09165at 1939.457 kb on + strand, within ABZR87_RS09165at 1939.457 kb on + strand, within ABZR87_RS09165at 1939.457 kb on + strand, within ABZR87_RS09165at 1939.458 kb on - strand, within ABZR87_RS09165at 1939.530 kb on - strand, within ABZR87_RS09165at 1939.538 kb on + strand, within ABZR87_RS09165at 1939.539 kb on - strand, within ABZR87_RS09165at 1939.574 kb on + strand, within ABZR87_RS09165at 1939.574 kb on + strand, within ABZR87_RS09165at 1939.575 kb on - strand, within ABZR87_RS09165at 1939.575 kb on - strand, within ABZR87_RS09165at 1939.575 kb on - strand, within ABZR87_RS09165at 1939.575 kb on - strand, within ABZR87_RS09165at 1939.581 kb on - strand, within ABZR87_RS09165at 1939.581 kb on - strand, within ABZR87_RS09165at 1939.700 kb on + strand, within ABZR87_RS09165at 1939.700 kb on + strand, within ABZR87_RS09165at 1939.701 kb on - strand, within ABZR87_RS09165at 1939.745 kb on + strand, within ABZR87_RS09165at 1939.745 kb on + strand, within ABZR87_RS09165at 1939.746 kb on - strand, within ABZR87_RS09165at 1939.746 kb on - strand, within ABZR87_RS09165at 1939.783 kb on + strand, within ABZR87_RS09165at 1939.784 kb on - strand, within ABZR87_RS09165at 1939.784 kb on - strand, within ABZR87_RS09165at 1939.784 kb on - strand, within ABZR87_RS09165at 1939.784 kb on - strand, within ABZR87_RS09165at 1939.784 kb on - strand, within ABZR87_RS09165at 1939.838 kb on + strand, within ABZR87_RS09165at 1939.937 kb on + strand, within ABZR87_RS09165at 1939.937 kb on + strand, within ABZR87_RS09165at 1939.937 kb on + strand, within ABZR87_RS09165at 1939.937 kb on + strand, within ABZR87_RS09165at 1939.937 kb on + strand, within ABZR87_RS09165at 1939.938 kb on - strand, within ABZR87_RS09165at 1940.051 kb on + strand, within ABZR87_RS09165at 1940.052 kb on - strand, within ABZR87_RS09165at 1940.052 kb on - strand, within ABZR87_RS09165at 1940.180 kb on + strand, within ABZR87_RS09165at 1940.181 kb on - strand, within ABZR87_RS09165at 1940.181 kb on - strand, within ABZR87_RS09165at 1940.197 kb on + strand, within ABZR87_RS09165at 1940.197 kb on + strand, within ABZR87_RS09165at 1940.197 kb on + strand, within ABZR87_RS09165at 1940.197 kb on + strand, within ABZR87_RS09165at 1940.198 kb on - strand, within ABZR87_RS09165at 1940.198 kb on - strand, within ABZR87_RS09165at 1940.198 kb on - strand, within ABZR87_RS09165at 1940.237 kb on + strand, within ABZR87_RS09165at 1940.237 kb on + strand, within ABZR87_RS09165at 1940.237 kb on + strand, within ABZR87_RS09165at 1940.237 kb on + strand, within ABZR87_RS09165at 1940.237 kb on + strand, within ABZR87_RS09165at 1940.238 kb on - strand, within ABZR87_RS09165at 1940.238 kb on - strand, within ABZR87_RS09165at 1940.240 kb on + strand, within ABZR87_RS09165at 1940.241 kb on - strand, within ABZR87_RS09165at 1940.281 kb on + strand, within ABZR87_RS09165at 1940.281 kb on + strand, within ABZR87_RS09165at 1940.371 kb on - strandat 1940.402 kb on + strandat 1940.402 kb on + strandat 1940.402 kb on + strandat 1940.402 kb on + strandat 1940.402 kb on + strandat 1940.402 kb on + strandat 1940.403 kb on - strandat 1940.403 kb on - strandat 1940.403 kb on - strandat 1940.403 kb on - strandat 1940.403 kb on - strandat 1940.403 kb on - strandat 1940.480 kb on + strandat 1940.481 kb on - strandat 1940.481 kb on - strandat 1940.481 kb on - strandat 1940.646 kb on + strandat 1940.646 kb on + strandat 1940.646 kb on + strandat 1940.647 kb on - strandat 1940.647 kb on - strandat 1940.747 kb on + strand, within ABZR87_RS09170at 1940.841 kb on + strand, within ABZR87_RS09170at 1940.841 kb on + strand, within ABZR87_RS09170at 1940.842 kb on - strand, within ABZR87_RS09170at 1940.842 kb on - strand, within ABZR87_RS09170at 1940.842 kb on - strand, within ABZR87_RS09170at 1940.842 kb on - strand, within ABZR87_RS09170at 1940.842 kb on - strand, within ABZR87_RS09170at 1940.842 kb on - strand, within ABZR87_RS09170at 1940.856 kb on + strand, within ABZR87_RS09170at 1940.856 kb on + strand, within ABZR87_RS09170at 1940.857 kb on - strand, within ABZR87_RS09170at 1940.857 kb on - strand, within ABZR87_RS09170at 1940.857 kb on - strand, within ABZR87_RS09170at 1940.857 kb on - strand, within ABZR87_RS09170at 1940.911 kb on + strand, within ABZR87_RS09170at 1940.911 kb on + strand, within ABZR87_RS09170at 1941.424 kb on + strand, within ABZR87_RS09170at 1941.425 kb on - strand, within ABZR87_RS09170at 1941.425 kb on - strand, within ABZR87_RS09170

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,938,259 + ABZR87_RS09160 0.42 +0.7
1,938,259 + ABZR87_RS09160 0.42 -0.5
1,938,259 + ABZR87_RS09160 0.42 +0.6
1,938,259 + ABZR87_RS09160 0.42 -1.6
1,938,259 + ABZR87_RS09160 0.42 +0.3
1,938,259 + ABZR87_RS09160 0.42 -0.1
1,938,259 + ABZR87_RS09160 0.42 -2.3
1,938,260 - ABZR87_RS09160 0.42 -1.7
1,938,260 - ABZR87_RS09160 0.42 +0.0
1,938,260 - ABZR87_RS09160 0.42 -0.8
1,938,260 - ABZR87_RS09160 0.42 +1.5
1,938,260 - ABZR87_RS09160 0.42 +1.9
1,938,559 + ABZR87_RS09160 0.60 +0.5
1,938,559 + ABZR87_RS09160 0.60 -1.8
1,938,559 + ABZR87_RS09160 0.60 -0.2
1,938,559 + ABZR87_RS09160 0.60 -0.4
1,938,560 - ABZR87_RS09160 0.60 +2.2
1,938,775 + ABZR87_RS09160 0.74 +4.4
1,938,775 + ABZR87_RS09160 0.74 +3.3
1,938,776 - ABZR87_RS09160 0.74 +0.5
1,938,776 - ABZR87_RS09160 0.74 +0.6
1,938,883 + ABZR87_RS09160 0.80 -0.9
1,938,883 + ABZR87_RS09160 0.80 -1.1
1,938,883 + ABZR87_RS09160 0.80 -0.7
1,938,883 + ABZR87_RS09160 0.80 -0.8
1,938,884 - ABZR87_RS09160 0.81 +0.0
1,938,884 - ABZR87_RS09160 0.81 -0.5
1,938,884 - ABZR87_RS09160 0.81 +0.1
1,938,898 + ABZR87_RS09160 0.81 +2.4
1,938,899 - ABZR87_RS09160 0.81 -0.7
1,938,899 - ABZR87_RS09160 0.81 +0.1
1,938,899 - ABZR87_RS09160 0.81 +0.2
1,938,921 + ABZR87_RS09160 0.83 +1.0
1,938,921 + ABZR87_RS09160 0.83 +0.0
1,938,922 - ABZR87_RS09160 0.83 +1.3
1,938,922 - ABZR87_RS09160 0.83 +0.6
1,938,922 - ABZR87_RS09160 0.83 -1.4
1,938,922 - ABZR87_RS09160 0.83 -0.4
1,938,922 - ABZR87_RS09160 0.83 +0.2
1,938,934 + ABZR87_RS09160 0.84 +1.3
1,938,934 + ABZR87_RS09160 0.84 +0.8
1,938,934 + ABZR87_RS09160 0.84 +0.1
1,939,304 + -0.2
1,939,305 - +0.1
1,939,305 - -0.1
1,939,305 - -1.6
1,939,339 + ABZR87_RS09165 0.11 +1.7
1,939,340 - ABZR87_RS09165 0.11 -0.0
1,939,406 + ABZR87_RS09165 0.16 -0.4
1,939,406 + ABZR87_RS09165 0.16 +0.5
1,939,407 - ABZR87_RS09165 0.16 -1.5
1,939,417 + ABZR87_RS09165 0.17 -0.0
1,939,417 + ABZR87_RS09165 0.17 -0.1
1,939,417 + ABZR87_RS09165 0.17 +0.4
1,939,418 - ABZR87_RS09165 0.17 +0.2
1,939,457 + ABZR87_RS09165 0.20 +2.3
1,939,457 + ABZR87_RS09165 0.20 -0.3
1,939,457 + ABZR87_RS09165 0.20 +0.3
1,939,458 - ABZR87_RS09165 0.20 -0.2
1,939,530 - ABZR87_RS09165 0.26 +1.3
1,939,538 + ABZR87_RS09165 0.26 -1.1
1,939,539 - ABZR87_RS09165 0.26 -0.6
1,939,574 + ABZR87_RS09165 0.29 -2.7
1,939,574 + ABZR87_RS09165 0.29 -0.8
1,939,575 - ABZR87_RS09165 0.29 +0.3
1,939,575 - ABZR87_RS09165 0.29 +0.3
1,939,575 - ABZR87_RS09165 0.29 +0.2
1,939,575 - ABZR87_RS09165 0.29 -0.2
1,939,581 - ABZR87_RS09165 0.30 +2.5
1,939,581 - ABZR87_RS09165 0.30 +0.6
1,939,700 + ABZR87_RS09165 0.39 +0.3
1,939,700 + ABZR87_RS09165 0.39 +0.0
1,939,701 - ABZR87_RS09165 0.39 +0.5
1,939,745 + ABZR87_RS09165 0.43 -0.6
1,939,745 + ABZR87_RS09165 0.43 +2.9
1,939,746 - ABZR87_RS09165 0.43 +1.9
1,939,746 - ABZR87_RS09165 0.43 -0.1
1,939,783 + ABZR87_RS09165 0.45 +0.7
1,939,784 - ABZR87_RS09165 0.46 -0.1
1,939,784 - ABZR87_RS09165 0.46 -1.3
1,939,784 - ABZR87_RS09165 0.46 +0.1
1,939,784 - ABZR87_RS09165 0.46 -0.6
1,939,784 - ABZR87_RS09165 0.46 -0.6
1,939,838 + ABZR87_RS09165 0.50 +1.9
1,939,937 + ABZR87_RS09165 0.57 -0.7
1,939,937 + ABZR87_RS09165 0.57 -0.5
1,939,937 + ABZR87_RS09165 0.57 +4.2
1,939,937 + ABZR87_RS09165 0.57 -1.8
1,939,937 + ABZR87_RS09165 0.57 +0.1
1,939,938 - ABZR87_RS09165 0.58 -0.1
1,940,051 + ABZR87_RS09165 0.66 +0.2
1,940,052 - ABZR87_RS09165 0.66 +0.3
1,940,052 - ABZR87_RS09165 0.66 +0.4
1,940,180 + ABZR87_RS09165 0.76 -0.2
1,940,181 - ABZR87_RS09165 0.76 -0.2
1,940,181 - ABZR87_RS09165 0.76 -0.1
1,940,197 + ABZR87_RS09165 0.78 -1.3
1,940,197 + ABZR87_RS09165 0.78 -0.9
1,940,197 + ABZR87_RS09165 0.78 -0.3
1,940,197 + ABZR87_RS09165 0.78 +1.5
1,940,198 - ABZR87_RS09165 0.78 -0.7
1,940,198 - ABZR87_RS09165 0.78 -0.3
1,940,198 - ABZR87_RS09165 0.78 +0.7
1,940,237 + ABZR87_RS09165 0.81 -0.9
1,940,237 + ABZR87_RS09165 0.81 +0.4
1,940,237 + ABZR87_RS09165 0.81 -0.1
1,940,237 + ABZR87_RS09165 0.81 -1.1
1,940,237 + ABZR87_RS09165 0.81 +0.6
1,940,238 - ABZR87_RS09165 0.81 +0.7
1,940,238 - ABZR87_RS09165 0.81 +0.4
1,940,240 + ABZR87_RS09165 0.81 +0.5
1,940,241 - ABZR87_RS09165 0.81 -0.5
1,940,281 + ABZR87_RS09165 0.84 +0.4
1,940,281 + ABZR87_RS09165 0.84 -0.6
1,940,371 - +1.1
1,940,402 + -0.7
1,940,402 + -1.5
1,940,402 + +0.0
1,940,402 + -0.2
1,940,402 + +0.7
1,940,402 + -0.3
1,940,403 - -0.1
1,940,403 - +0.1
1,940,403 - -0.3
1,940,403 - +0.3
1,940,403 - -1.3
1,940,403 - -0.1
1,940,480 + +0.5
1,940,481 - +0.1
1,940,481 - -0.4
1,940,481 - -0.7
1,940,646 + +0.6
1,940,646 + -0.2
1,940,646 + +0.5
1,940,647 - +0.1
1,940,647 - -0.1
1,940,747 + ABZR87_RS09170 0.11 -0.3
1,940,841 + ABZR87_RS09170 0.15 -0.3
1,940,841 + ABZR87_RS09170 0.15 -1.0
1,940,842 - ABZR87_RS09170 0.15 +0.8
1,940,842 - ABZR87_RS09170 0.15 +0.7
1,940,842 - ABZR87_RS09170 0.15 +1.3
1,940,842 - ABZR87_RS09170 0.15 +1.1
1,940,842 - ABZR87_RS09170 0.15 -1.0
1,940,842 - ABZR87_RS09170 0.15 +1.8
1,940,856 + ABZR87_RS09170 0.15 -0.1
1,940,856 + ABZR87_RS09170 0.15 +1.6
1,940,857 - ABZR87_RS09170 0.15 -2.4
1,940,857 - ABZR87_RS09170 0.15 +1.0
1,940,857 - ABZR87_RS09170 0.15 -0.9
1,940,857 - ABZR87_RS09170 0.15 -0.3
1,940,911 + ABZR87_RS09170 0.18 -1.1
1,940,911 + ABZR87_RS09170 0.18 -1.5
1,941,424 + ABZR87_RS09170 0.40 +0.2
1,941,425 - ABZR87_RS09170 0.40 +0.5
1,941,425 - ABZR87_RS09170 0.40 +0.6

Or see this region's nucleotide sequence