Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08555

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS08545 and ABZR87_RS08550 are separated by 13 nucleotidesABZR87_RS08550 and ABZR87_RS08555 are separated by 106 nucleotidesABZR87_RS08555 and ABZR87_RS08560 are separated by 92 nucleotides ABZR87_RS08545: ABZR87_RS08545 - YgcG family protein, at 1,813,844 to 1,814,719 _RS08545 ABZR87_RS08550: ABZR87_RS08550 - LemA family protein, at 1,814,733 to 1,815,359 _RS08550 ABZR87_RS08555: ABZR87_RS08555 - hypothetical protein, at 1,815,466 to 1,815,669 _RS08555 ABZR87_RS08560: ABZR87_RS08560 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,815,762 to 1,816,670 _RS08560 Position (kb) 1815 1816Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1814.532 kb on + strand, within ABZR87_RS08545at 1814.803 kb on + strand, within ABZR87_RS08550at 1814.803 kb on + strand, within ABZR87_RS08550at 1814.804 kb on - strand, within ABZR87_RS08550at 1814.804 kb on - strand, within ABZR87_RS08550at 1814.857 kb on + strand, within ABZR87_RS08550at 1814.858 kb on - strand, within ABZR87_RS08550at 1814.858 kb on - strand, within ABZR87_RS08550at 1814.858 kb on - strand, within ABZR87_RS08550at 1814.858 kb on - strand, within ABZR87_RS08550at 1814.878 kb on + strand, within ABZR87_RS08550at 1814.878 kb on + strand, within ABZR87_RS08550at 1814.878 kb on + strand, within ABZR87_RS08550at 1814.879 kb on - strand, within ABZR87_RS08550at 1814.879 kb on - strand, within ABZR87_RS08550at 1814.879 kb on - strand, within ABZR87_RS08550at 1814.898 kb on - strand, within ABZR87_RS08550at 1815.142 kb on + strand, within ABZR87_RS08550at 1815.142 kb on + strand, within ABZR87_RS08550at 1815.143 kb on - strand, within ABZR87_RS08550at 1815.194 kb on - strand, within ABZR87_RS08550at 1815.194 kb on - strand, within ABZR87_RS08550at 1815.194 kb on - strand, within ABZR87_RS08550at 1815.194 kb on - strand, within ABZR87_RS08550at 1815.256 kb on + strand, within ABZR87_RS08550at 1815.257 kb on - strand, within ABZR87_RS08550at 1815.257 kb on - strand, within ABZR87_RS08550at 1815.369 kb on + strandat 1815.370 kb on - strandat 1815.435 kb on + strandat 1815.436 kb on - strandat 1815.440 kb on + strandat 1815.440 kb on + strandat 1815.441 kb on - strandat 1815.441 kb on - strandat 1815.441 kb on - strandat 1815.441 kb on - strandat 1815.441 kb on - strandat 1815.470 kb on + strandat 1815.470 kb on + strandat 1815.470 kb on + strandat 1815.471 kb on - strandat 1815.471 kb on - strandat 1815.475 kb on + strandat 1815.476 kb on - strandat 1815.476 kb on - strandat 1815.476 kb on - strandat 1815.530 kb on - strand, within ABZR87_RS08555at 1815.530 kb on - strand, within ABZR87_RS08555at 1815.530 kb on - strand, within ABZR87_RS08555at 1815.659 kb on - strandat 1815.659 kb on - strandat 1815.659 kb on - strandat 1815.659 kb on - strandat 1815.810 kb on + strandat 1815.811 kb on - strandat 1815.873 kb on + strand, within ABZR87_RS08560at 1815.885 kb on + strand, within ABZR87_RS08560at 1815.885 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on + strand, within ABZR87_RS08560at 1815.887 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.888 kb on - strand, within ABZR87_RS08560at 1815.892 kb on + strand, within ABZR87_RS08560at 1815.892 kb on + strand, within ABZR87_RS08560at 1815.892 kb on + strand, within ABZR87_RS08560at 1815.892 kb on + strand, within ABZR87_RS08560at 1815.893 kb on - strand, within ABZR87_RS08560at 1816.000 kb on + strand, within ABZR87_RS08560at 1816.000 kb on + strand, within ABZR87_RS08560at 1816.000 kb on + strand, within ABZR87_RS08560at 1816.000 kb on + strand, within ABZR87_RS08560at 1816.000 kb on + strand, within ABZR87_RS08560at 1816.001 kb on - strand, within ABZR87_RS08560at 1816.001 kb on - strand, within ABZR87_RS08560at 1816.001 kb on - strand, within ABZR87_RS08560at 1816.001 kb on - strand, within ABZR87_RS08560at 1816.001 kb on - strand, within ABZR87_RS08560at 1816.063 kb on + strand, within ABZR87_RS08560at 1816.063 kb on + strand, within ABZR87_RS08560at 1816.063 kb on + strand, within ABZR87_RS08560at 1816.064 kb on - strand, within ABZR87_RS08560at 1816.128 kb on + strand, within ABZR87_RS08560at 1816.128 kb on + strand, within ABZR87_RS08560at 1816.128 kb on + strand, within ABZR87_RS08560at 1816.128 kb on + strand, within ABZR87_RS08560at 1816.129 kb on - strand, within ABZR87_RS08560at 1816.129 kb on - strand, within ABZR87_RS08560at 1816.129 kb on - strand, within ABZR87_RS08560at 1816.161 kb on + strand, within ABZR87_RS08560at 1816.162 kb on - strand, within ABZR87_RS08560at 1816.162 kb on - strand, within ABZR87_RS08560at 1816.162 kb on - strand, within ABZR87_RS08560at 1816.206 kb on + strand, within ABZR87_RS08560at 1816.206 kb on + strand, within ABZR87_RS08560at 1816.206 kb on + strand, within ABZR87_RS08560at 1816.206 kb on + strand, within ABZR87_RS08560at 1816.206 kb on + strand, within ABZR87_RS08560at 1816.207 kb on - strand, within ABZR87_RS08560at 1816.207 kb on - strand, within ABZR87_RS08560at 1816.207 kb on - strand, within ABZR87_RS08560at 1816.207 kb on - strand, within ABZR87_RS08560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
1,814,532 + ABZR87_RS08545 0.79 -0.3
1,814,803 + ABZR87_RS08550 0.11 -0.6
1,814,803 + ABZR87_RS08550 0.11 -1.2
1,814,804 - ABZR87_RS08550 0.11 +0.5
1,814,804 - ABZR87_RS08550 0.11 +1.3
1,814,857 + ABZR87_RS08550 0.20 -1.5
1,814,858 - ABZR87_RS08550 0.20 +0.8
1,814,858 - ABZR87_RS08550 0.20 -0.8
1,814,858 - ABZR87_RS08550 0.20 +0.9
1,814,858 - ABZR87_RS08550 0.20 -1.0
1,814,878 + ABZR87_RS08550 0.23 -0.0
1,814,878 + ABZR87_RS08550 0.23 -0.9
1,814,878 + ABZR87_RS08550 0.23 -1.4
1,814,879 - ABZR87_RS08550 0.23 -1.3
1,814,879 - ABZR87_RS08550 0.23 +1.1
1,814,879 - ABZR87_RS08550 0.23 +0.4
1,814,898 - ABZR87_RS08550 0.26 -1.5
1,815,142 + ABZR87_RS08550 0.65 -1.4
1,815,142 + ABZR87_RS08550 0.65 -0.1
1,815,143 - ABZR87_RS08550 0.65 +0.9
1,815,194 - ABZR87_RS08550 0.74 -0.5
1,815,194 - ABZR87_RS08550 0.74 +0.4
1,815,194 - ABZR87_RS08550 0.74 -0.1
1,815,194 - ABZR87_RS08550 0.74 -0.1
1,815,256 + ABZR87_RS08550 0.83 -1.4
1,815,257 - ABZR87_RS08550 0.84 +1.7
1,815,257 - ABZR87_RS08550 0.84 +4.0
1,815,369 + +0.9
1,815,370 - -0.8
1,815,435 + +4.1
1,815,436 - -0.4
1,815,440 + -0.2
1,815,440 + +0.2
1,815,441 - +0.2
1,815,441 - -0.2
1,815,441 - -0.9
1,815,441 - -0.3
1,815,441 - +1.7
1,815,470 + +0.4
1,815,470 + -1.3
1,815,470 + -1.5
1,815,471 - +1.7
1,815,471 - -0.2
1,815,475 + +0.5
1,815,476 - -1.2
1,815,476 - -0.8
1,815,476 - -0.0
1,815,530 - ABZR87_RS08555 0.31 -1.2
1,815,530 - ABZR87_RS08555 0.31 -0.7
1,815,530 - ABZR87_RS08555 0.31 -1.6
1,815,659 - +0.7
1,815,659 - +0.6
1,815,659 - +0.7
1,815,659 - -1.4
1,815,810 + -0.1
1,815,811 - +0.2
1,815,873 + ABZR87_RS08560 0.12 -2.0
1,815,885 + ABZR87_RS08560 0.14 +0.2
1,815,885 + ABZR87_RS08560 0.14 -0.5
1,815,887 + ABZR87_RS08560 0.14 +0.2
1,815,887 + ABZR87_RS08560 0.14 +0.4
1,815,887 + ABZR87_RS08560 0.14 -0.2
1,815,887 + ABZR87_RS08560 0.14 +3.4
1,815,887 + ABZR87_RS08560 0.14 +0.7
1,815,887 + ABZR87_RS08560 0.14 -0.7
1,815,887 + ABZR87_RS08560 0.14 -1.3
1,815,887 + ABZR87_RS08560 0.14 +1.3
1,815,887 + ABZR87_RS08560 0.14 -0.6
1,815,887 + ABZR87_RS08560 0.14 -0.7
1,815,887 - ABZR87_RS08560 0.14 +0.3
1,815,888 - ABZR87_RS08560 0.14 -1.3
1,815,888 - ABZR87_RS08560 0.14 +1.2
1,815,888 - ABZR87_RS08560 0.14 -0.5
1,815,888 - ABZR87_RS08560 0.14 +3.4
1,815,888 - ABZR87_RS08560 0.14 +0.7
1,815,888 - ABZR87_RS08560 0.14 +1.4
1,815,888 - ABZR87_RS08560 0.14 -1.5
1,815,888 - ABZR87_RS08560 0.14 +0.8
1,815,888 - ABZR87_RS08560 0.14 -1.6
1,815,888 - ABZR87_RS08560 0.14 -0.4
1,815,888 - ABZR87_RS08560 0.14 +0.8
1,815,888 - ABZR87_RS08560 0.14 +0.3
1,815,888 - ABZR87_RS08560 0.14 +1.3
1,815,892 + ABZR87_RS08560 0.14 -1.0
1,815,892 + ABZR87_RS08560 0.14 +2.9
1,815,892 + ABZR87_RS08560 0.14 +0.2
1,815,892 + ABZR87_RS08560 0.14 -0.4
1,815,893 - ABZR87_RS08560 0.14 -0.8
1,816,000 + ABZR87_RS08560 0.26 -0.7
1,816,000 + ABZR87_RS08560 0.26 +0.8
1,816,000 + ABZR87_RS08560 0.26 +0.5
1,816,000 + ABZR87_RS08560 0.26 -0.8
1,816,000 + ABZR87_RS08560 0.26 +0.4
1,816,001 - ABZR87_RS08560 0.26 -1.3
1,816,001 - ABZR87_RS08560 0.26 -0.5
1,816,001 - ABZR87_RS08560 0.26 +0.3
1,816,001 - ABZR87_RS08560 0.26 +0.7
1,816,001 - ABZR87_RS08560 0.26 +2.0
1,816,063 + ABZR87_RS08560 0.33 -0.5
1,816,063 + ABZR87_RS08560 0.33 -3.0
1,816,063 + ABZR87_RS08560 0.33 -2.0
1,816,064 - ABZR87_RS08560 0.33 -0.3
1,816,128 + ABZR87_RS08560 0.40 +1.3
1,816,128 + ABZR87_RS08560 0.40 +0.8
1,816,128 + ABZR87_RS08560 0.40 -0.3
1,816,128 + ABZR87_RS08560 0.40 -1.3
1,816,129 - ABZR87_RS08560 0.40 -2.0
1,816,129 - ABZR87_RS08560 0.40 -0.9
1,816,129 - ABZR87_RS08560 0.40 +0.4
1,816,161 + ABZR87_RS08560 0.44 +0.1
1,816,162 - ABZR87_RS08560 0.44 -0.2
1,816,162 - ABZR87_RS08560 0.44 +0.5
1,816,162 - ABZR87_RS08560 0.44 -1.1
1,816,206 + ABZR87_RS08560 0.49 +0.0
1,816,206 + ABZR87_RS08560 0.49 -0.4
1,816,206 + ABZR87_RS08560 0.49 -0.8
1,816,206 + ABZR87_RS08560 0.49 -0.4
1,816,206 + ABZR87_RS08560 0.49 +0.0
1,816,207 - ABZR87_RS08560 0.49 +1.5
1,816,207 - ABZR87_RS08560 0.49 +0.4
1,816,207 - ABZR87_RS08560 0.49 +0.5
1,816,207 - ABZR87_RS08560 0.49 -0.6

Or see this region's nucleotide sequence