Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07980

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07970 and ABZR87_RS07975 are separated by 291 nucleotidesABZR87_RS07975 and ABZR87_RS07980 are separated by 66 nucleotidesABZR87_RS07980 and ABZR87_RS07985 are separated by 94 nucleotides ABZR87_RS07970: ABZR87_RS07970 - recombination regulator RecX, at 1,694,673 to 1,695,152 _RS07970 ABZR87_RS07975: ABZR87_RS07975 - DUF2889 domain-containing protein, at 1,695,444 to 1,696,070 _RS07975 ABZR87_RS07980: ABZR87_RS07980 - ADP-forming succinate--CoA ligase subunit beta, at 1,696,137 to 1,697,303 _RS07980 ABZR87_RS07985: ABZR87_RS07985 - succinate--CoA ligase subunit alpha, at 1,697,398 to 1,698,279 _RS07985 Position (kb) 1696 1697 1698Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1695.341 kb on + strandat 1695.341 kb on + strandat 1695.341 kb on + strandat 1695.341 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.375 kb on + strandat 1695.426 kb on + strandat 1695.507 kb on + strand, within ABZR87_RS07975at 1695.569 kb on + strand, within ABZR87_RS07975at 1695.806 kb on + strand, within ABZR87_RS07975at 1695.887 kb on + strand, within ABZR87_RS07975at 1695.933 kb on + strand, within ABZR87_RS07975at 1696.008 kb on + strandat 1696.008 kb on + strandat 1696.009 kb on - strandat 1696.099 kb on - strandat 1696.111 kb on + strandat 1696.111 kb on + strandat 1696.111 kb on + strandat 1696.111 kb on + strandat 1696.111 kb on + strandat 1696.120 kb on + strandat 1696.143 kb on - strandat 1696.152 kb on + strandat 1696.153 kb on - strandat 1697.301 kb on + strandat 1697.301 kb on + strandat 1697.324 kb on + strandat 1697.351 kb on + strandat 1697.361 kb on + strandat 1697.383 kb on + strandat 1697.383 kb on + strandat 1697.393 kb on - strandat 1697.567 kb on - strand, within ABZR87_RS07985at 1698.278 kb on - strandat 1698.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,695,341 + -1.3
1,695,341 + -0.1
1,695,341 + -1.6
1,695,341 + -0.1
1,695,375 + +0.9
1,695,375 + +0.2
1,695,375 + -0.1
1,695,375 + -1.4
1,695,375 + +0.6
1,695,375 + -0.8
1,695,426 + -0.8
1,695,507 + ABZR87_RS07975 0.10 -3.0
1,695,569 + ABZR87_RS07975 0.20 -0.0
1,695,806 + ABZR87_RS07975 0.58 +0.5
1,695,887 + ABZR87_RS07975 0.71 +0.1
1,695,933 + ABZR87_RS07975 0.78 -0.4
1,696,008 + -2.6
1,696,008 + -0.3
1,696,009 - +0.9
1,696,099 - +0.6
1,696,111 + +1.4
1,696,111 + -1.8
1,696,111 + -0.8
1,696,111 + +0.5
1,696,111 + +0.5
1,696,120 + +0.8
1,696,143 - -0.6
1,696,152 + +0.9
1,696,153 - -0.8
1,697,301 + -0.6
1,697,301 + -1.2
1,697,324 + +0.4
1,697,351 + -0.4
1,697,361 + -1.6
1,697,383 + -0.5
1,697,383 + -0.6
1,697,393 - +1.9
1,697,567 - ABZR87_RS07985 0.19 -1.4
1,698,278 - -2.0
1,698,278 - +1.7

Or see this region's nucleotide sequence