Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05685

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05675 and ABZR87_RS05680 overlap by 4 nucleotidesABZR87_RS05680 and ABZR87_RS05685 overlap by 4 nucleotidesABZR87_RS05685 and ABZR87_RS05690 are separated by 7 nucleotides ABZR87_RS05675: ABZR87_RS05675 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,204,783 to 1,205,757 _RS05675 ABZR87_RS05680: ABZR87_RS05680 - ABC transporter ATP-binding protein, at 1,205,754 to 1,206,725 _RS05680 ABZR87_RS05685: ABZR87_RS05685 - ABC transporter permease, at 1,206,722 to 1,207,897 _RS05685 ABZR87_RS05690: ABZR87_RS05690 - efflux transporter outer membrane subunit, at 1,207,905 to 1,209,644 _RS05690 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1205.793 kb on - strandat 1205.802 kb on + strandat 1205.803 kb on - strandat 1205.803 kb on - strandat 1205.803 kb on - strandat 1205.992 kb on - strand, within ABZR87_RS05680at 1206.002 kb on + strand, within ABZR87_RS05680at 1206.003 kb on - strand, within ABZR87_RS05680at 1206.003 kb on - strand, within ABZR87_RS05680at 1206.036 kb on + strand, within ABZR87_RS05680at 1206.109 kb on - strand, within ABZR87_RS05680at 1206.109 kb on - strand, within ABZR87_RS05680at 1206.369 kb on + strand, within ABZR87_RS05680at 1206.369 kb on + strand, within ABZR87_RS05680at 1206.369 kb on + strand, within ABZR87_RS05680at 1206.369 kb on + strand, within ABZR87_RS05680at 1206.369 kb on + strand, within ABZR87_RS05680at 1206.369 kb on + strand, within ABZR87_RS05680at 1206.370 kb on - strand, within ABZR87_RS05680at 1206.370 kb on - strand, within ABZR87_RS05680at 1206.370 kb on - strand, within ABZR87_RS05680at 1206.370 kb on - strand, within ABZR87_RS05680at 1206.370 kb on - strand, within ABZR87_RS05680at 1206.370 kb on - strand, within ABZR87_RS05680at 1206.370 kb on - strand, within ABZR87_RS05680at 1206.370 kb on - strand, within ABZR87_RS05680at 1206.405 kb on + strand, within ABZR87_RS05680at 1206.405 kb on + strand, within ABZR87_RS05680at 1206.406 kb on - strand, within ABZR87_RS05680at 1206.406 kb on - strand, within ABZR87_RS05680at 1206.406 kb on - strand, within ABZR87_RS05680at 1206.415 kb on - strand, within ABZR87_RS05680at 1206.415 kb on - strand, within ABZR87_RS05680at 1206.499 kb on + strand, within ABZR87_RS05680at 1206.499 kb on + strand, within ABZR87_RS05680at 1206.499 kb on + strand, within ABZR87_RS05680at 1206.708 kb on + strandat 1206.708 kb on + strandat 1206.708 kb on + strandat 1206.709 kb on - strandat 1206.709 kb on - strandat 1206.709 kb on - strandat 1206.962 kb on + strand, within ABZR87_RS05685at 1206.963 kb on - strand, within ABZR87_RS05685at 1206.963 kb on - strand, within ABZR87_RS05685at 1207.283 kb on + strand, within ABZR87_RS05685at 1207.283 kb on + strand, within ABZR87_RS05685at 1207.283 kb on + strand, within ABZR87_RS05685at 1207.283 kb on + strand, within ABZR87_RS05685at 1207.283 kb on + strand, within ABZR87_RS05685at 1207.284 kb on - strand, within ABZR87_RS05685at 1207.284 kb on - strand, within ABZR87_RS05685at 1207.284 kb on - strand, within ABZR87_RS05685at 1207.284 kb on - strand, within ABZR87_RS05685at 1207.307 kb on + strand, within ABZR87_RS05685at 1207.307 kb on + strand, within ABZR87_RS05685at 1207.308 kb on - strand, within ABZR87_RS05685at 1207.308 kb on - strand, within ABZR87_RS05685at 1207.466 kb on + strand, within ABZR87_RS05685at 1207.466 kb on + strand, within ABZR87_RS05685at 1207.467 kb on - strand, within ABZR87_RS05685at 1207.467 kb on - strand, within ABZR87_RS05685at 1207.467 kb on - strand, within ABZR87_RS05685at 1207.467 kb on - strand, within ABZR87_RS05685at 1207.559 kb on + strand, within ABZR87_RS05685at 1207.559 kb on + strand, within ABZR87_RS05685at 1207.559 kb on + strand, within ABZR87_RS05685at 1207.559 kb on + strand, within ABZR87_RS05685at 1207.559 kb on + strand, within ABZR87_RS05685at 1207.559 kb on + strand, within ABZR87_RS05685at 1207.559 kb on + strand, within ABZR87_RS05685at 1207.559 kb on + strand, within ABZR87_RS05685at 1207.560 kb on - strand, within ABZR87_RS05685at 1207.560 kb on - strand, within ABZR87_RS05685at 1207.560 kb on - strand, within ABZR87_RS05685at 1207.560 kb on - strand, within ABZR87_RS05685at 1207.560 kb on - strand, within ABZR87_RS05685at 1207.580 kb on - strand, within ABZR87_RS05685at 1207.580 kb on - strand, within ABZR87_RS05685at 1207.580 kb on - strand, within ABZR87_RS05685at 1207.661 kb on + strand, within ABZR87_RS05685at 1207.661 kb on + strand, within ABZR87_RS05685at 1207.661 kb on + strand, within ABZR87_RS05685at 1207.661 kb on + strand, within ABZR87_RS05685at 1207.662 kb on - strand, within ABZR87_RS05685at 1207.662 kb on - strand, within ABZR87_RS05685at 1207.662 kb on - strand, within ABZR87_RS05685at 1207.662 kb on - strand, within ABZR87_RS05685at 1207.662 kb on - strand, within ABZR87_RS05685at 1207.662 kb on - strand, within ABZR87_RS05685at 1207.662 kb on - strand, within ABZR87_RS05685at 1207.757 kb on + strand, within ABZR87_RS05685at 1207.757 kb on + strand, within ABZR87_RS05685at 1207.757 kb on + strand, within ABZR87_RS05685at 1207.758 kb on - strand, within ABZR87_RS05685at 1207.844 kb on - strandat 1207.878 kb on - strandat 1207.878 kb on - strandat 1207.878 kb on - strandat 1207.878 kb on - strandat 1207.904 kb on + strandat 1207.904 kb on + strandat 1207.904 kb on + strandat 1207.904 kb on + strandat 1207.904 kb on + strandat 1207.905 kb on - strandat 1207.905 kb on - strandat 1207.905 kb on - strandat 1207.905 kb on - strandat 1207.905 kb on - strandat 1207.978 kb on + strandat 1207.978 kb on + strandat 1207.978 kb on + strandat 1208.054 kb on + strandat 1208.119 kb on + strand, within ABZR87_RS05690at 1208.119 kb on + strand, within ABZR87_RS05690at 1208.141 kb on + strand, within ABZR87_RS05690at 1208.141 kb on + strand, within ABZR87_RS05690at 1208.141 kb on + strand, within ABZR87_RS05690at 1208.141 kb on + strand, within ABZR87_RS05690at 1208.142 kb on - strand, within ABZR87_RS05690at 1208.142 kb on - strand, within ABZR87_RS05690at 1208.242 kb on + strand, within ABZR87_RS05690at 1208.243 kb on - strand, within ABZR87_RS05690at 1208.243 kb on - strand, within ABZR87_RS05690at 1208.300 kb on + strand, within ABZR87_RS05690at 1208.307 kb on + strand, within ABZR87_RS05690at 1208.308 kb on - strand, within ABZR87_RS05690at 1208.624 kb on + strand, within ABZR87_RS05690at 1208.625 kb on - strand, within ABZR87_RS05690at 1208.631 kb on + strand, within ABZR87_RS05690at 1208.631 kb on + strand, within ABZR87_RS05690at 1208.631 kb on + strand, within ABZR87_RS05690at 1208.631 kb on + strand, within ABZR87_RS05690at 1208.632 kb on - strand, within ABZR87_RS05690at 1208.632 kb on - strand, within ABZR87_RS05690at 1208.655 kb on + strand, within ABZR87_RS05690at 1208.655 kb on + strand, within ABZR87_RS05690at 1208.656 kb on - strand, within ABZR87_RS05690at 1208.656 kb on - strand, within ABZR87_RS05690at 1208.656 kb on - strand, within ABZR87_RS05690at 1208.666 kb on + strand, within ABZR87_RS05690at 1208.717 kb on + strand, within ABZR87_RS05690at 1208.727 kb on + strand, within ABZR87_RS05690at 1208.727 kb on + strand, within ABZR87_RS05690at 1208.727 kb on + strand, within ABZR87_RS05690at 1208.728 kb on - strand, within ABZR87_RS05690

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,205,793 - +0.6
1,205,802 + -0.3
1,205,803 - -0.1
1,205,803 - +0.0
1,205,803 - -1.4
1,205,992 - ABZR87_RS05680 0.24 -0.0
1,206,002 + ABZR87_RS05680 0.26 -0.9
1,206,003 - ABZR87_RS05680 0.26 -0.1
1,206,003 - ABZR87_RS05680 0.26 +1.8
1,206,036 + ABZR87_RS05680 0.29 +0.1
1,206,109 - ABZR87_RS05680 0.37 +0.1
1,206,109 - ABZR87_RS05680 0.37 +0.2
1,206,369 + ABZR87_RS05680 0.63 -0.2
1,206,369 + ABZR87_RS05680 0.63 +1.2
1,206,369 + ABZR87_RS05680 0.63 +0.2
1,206,369 + ABZR87_RS05680 0.63 +2.2
1,206,369 + ABZR87_RS05680 0.63 +1.0
1,206,369 + ABZR87_RS05680 0.63 -1.6
1,206,370 - ABZR87_RS05680 0.63 +0.0
1,206,370 - ABZR87_RS05680 0.63 -0.6
1,206,370 - ABZR87_RS05680 0.63 -0.5
1,206,370 - ABZR87_RS05680 0.63 -1.1
1,206,370 - ABZR87_RS05680 0.63 +0.1
1,206,370 - ABZR87_RS05680 0.63 +0.1
1,206,370 - ABZR87_RS05680 0.63 -0.5
1,206,370 - ABZR87_RS05680 0.63 -0.2
1,206,405 + ABZR87_RS05680 0.67 -0.5
1,206,405 + ABZR87_RS05680 0.67 +0.7
1,206,406 - ABZR87_RS05680 0.67 +0.6
1,206,406 - ABZR87_RS05680 0.67 +1.6
1,206,406 - ABZR87_RS05680 0.67 +1.3
1,206,415 - ABZR87_RS05680 0.68 -0.4
1,206,415 - ABZR87_RS05680 0.68 -1.0
1,206,499 + ABZR87_RS05680 0.77 +1.6
1,206,499 + ABZR87_RS05680 0.77 +0.7
1,206,499 + ABZR87_RS05680 0.77 -0.5
1,206,708 + -0.5
1,206,708 + +1.0
1,206,708 + -0.5
1,206,709 - +2.6
1,206,709 - +0.5
1,206,709 - -0.4
1,206,962 + ABZR87_RS05685 0.20 -0.7
1,206,963 - ABZR87_RS05685 0.20 -0.1
1,206,963 - ABZR87_RS05685 0.20 +0.3
1,207,283 + ABZR87_RS05685 0.48 -0.7
1,207,283 + ABZR87_RS05685 0.48 -2.0
1,207,283 + ABZR87_RS05685 0.48 -0.2
1,207,283 + ABZR87_RS05685 0.48 -0.5
1,207,283 + ABZR87_RS05685 0.48 +4.1
1,207,284 - ABZR87_RS05685 0.48 -0.9
1,207,284 - ABZR87_RS05685 0.48 +3.6
1,207,284 - ABZR87_RS05685 0.48 -0.3
1,207,284 - ABZR87_RS05685 0.48 -0.2
1,207,307 + ABZR87_RS05685 0.50 +0.7
1,207,307 + ABZR87_RS05685 0.50 +2.3
1,207,308 - ABZR87_RS05685 0.50 +1.1
1,207,308 - ABZR87_RS05685 0.50 -0.3
1,207,466 + ABZR87_RS05685 0.63 +1.1
1,207,466 + ABZR87_RS05685 0.63 -0.1
1,207,467 - ABZR87_RS05685 0.63 +1.1
1,207,467 - ABZR87_RS05685 0.63 -0.1
1,207,467 - ABZR87_RS05685 0.63 -0.2
1,207,467 - ABZR87_RS05685 0.63 -0.1
1,207,559 + ABZR87_RS05685 0.71 +0.5
1,207,559 + ABZR87_RS05685 0.71 +0.9
1,207,559 + ABZR87_RS05685 0.71 +0.2
1,207,559 + ABZR87_RS05685 0.71 -0.3
1,207,559 + ABZR87_RS05685 0.71 +1.3
1,207,559 + ABZR87_RS05685 0.71 +1.8
1,207,559 + ABZR87_RS05685 0.71 +0.1
1,207,559 + ABZR87_RS05685 0.71 -0.5
1,207,560 - ABZR87_RS05685 0.71 -0.8
1,207,560 - ABZR87_RS05685 0.71 +0.9
1,207,560 - ABZR87_RS05685 0.71 +0.1
1,207,560 - ABZR87_RS05685 0.71 +1.2
1,207,560 - ABZR87_RS05685 0.71 +2.1
1,207,580 - ABZR87_RS05685 0.73 -0.3
1,207,580 - ABZR87_RS05685 0.73 +1.0
1,207,580 - ABZR87_RS05685 0.73 +0.2
1,207,661 + ABZR87_RS05685 0.80 -1.4
1,207,661 + ABZR87_RS05685 0.80 +0.6
1,207,661 + ABZR87_RS05685 0.80 -0.5
1,207,661 + ABZR87_RS05685 0.80 +0.3
1,207,662 - ABZR87_RS05685 0.80 +1.0
1,207,662 - ABZR87_RS05685 0.80 +0.5
1,207,662 - ABZR87_RS05685 0.80 +2.0
1,207,662 - ABZR87_RS05685 0.80 -2.4
1,207,662 - ABZR87_RS05685 0.80 -1.2
1,207,662 - ABZR87_RS05685 0.80 +0.4
1,207,662 - ABZR87_RS05685 0.80 -1.2
1,207,757 + ABZR87_RS05685 0.88 -0.6
1,207,757 + ABZR87_RS05685 0.88 -2.2
1,207,757 + ABZR87_RS05685 0.88 -0.4
1,207,758 - ABZR87_RS05685 0.88 +0.6
1,207,844 - +0.2
1,207,878 - -0.3
1,207,878 - +1.6
1,207,878 - -1.7
1,207,878 - +4.4
1,207,904 + +1.2
1,207,904 + +1.0
1,207,904 + -1.3
1,207,904 + -0.6
1,207,904 + -0.8
1,207,905 - -0.1
1,207,905 - -0.3
1,207,905 - -2.1
1,207,905 - -1.1
1,207,905 - -0.6
1,207,978 + +0.5
1,207,978 + +0.5
1,207,978 + -0.3
1,208,054 + +2.3
1,208,119 + ABZR87_RS05690 0.12 +0.3
1,208,119 + ABZR87_RS05690 0.12 +0.9
1,208,141 + ABZR87_RS05690 0.14 +2.0
1,208,141 + ABZR87_RS05690 0.14 -0.5
1,208,141 + ABZR87_RS05690 0.14 +0.9
1,208,141 + ABZR87_RS05690 0.14 -0.4
1,208,142 - ABZR87_RS05690 0.14 +1.6
1,208,142 - ABZR87_RS05690 0.14 +0.0
1,208,242 + ABZR87_RS05690 0.19 +0.5
1,208,243 - ABZR87_RS05690 0.19 +0.9
1,208,243 - ABZR87_RS05690 0.19 +0.3
1,208,300 + ABZR87_RS05690 0.23 -0.3
1,208,307 + ABZR87_RS05690 0.23 -1.2
1,208,308 - ABZR87_RS05690 0.23 -0.6
1,208,624 + ABZR87_RS05690 0.41 -0.5
1,208,625 - ABZR87_RS05690 0.41 +0.7
1,208,631 + ABZR87_RS05690 0.42 -0.5
1,208,631 + ABZR87_RS05690 0.42 +0.6
1,208,631 + ABZR87_RS05690 0.42 -0.5
1,208,631 + ABZR87_RS05690 0.42 -0.5
1,208,632 - ABZR87_RS05690 0.42 -0.4
1,208,632 - ABZR87_RS05690 0.42 -1.6
1,208,655 + ABZR87_RS05690 0.43 +1.3
1,208,655 + ABZR87_RS05690 0.43 +0.2
1,208,656 - ABZR87_RS05690 0.43 +0.6
1,208,656 - ABZR87_RS05690 0.43 -0.1
1,208,656 - ABZR87_RS05690 0.43 -0.7
1,208,666 + ABZR87_RS05690 0.44 +0.2
1,208,717 + ABZR87_RS05690 0.47 -0.1
1,208,727 + ABZR87_RS05690 0.47 +1.6
1,208,727 + ABZR87_RS05690 0.47 -0.5
1,208,727 + ABZR87_RS05690 0.47 +0.7
1,208,728 - ABZR87_RS05690 0.47 +0.6

Or see this region's nucleotide sequence