Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05040 and ABZR87_RS05045 are separated by 38 nucleotides ABZR87_RS05045 and ABZR87_RS05050 overlap by 1 nucleotides ABZR87_RS05050 and ABZR87_RS05055 are separated by 85 nucleotides
ABZR87_RS05040: ABZR87_RS05040 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 1,061,703 to 1,063,190
_RS05040
ABZR87_RS05045: ABZR87_RS05045 - hypothetical protein, at 1,063,229 to 1,063,711
_RS05045
ABZR87_RS05050: ABZR87_RS05050 - dienelactone hydrolase family protein, at 1,063,711 to 1,064,673
_RS05050
ABZR87_RS05055: ABZR87_RS05055 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 1,064,759 to 1,066,225
_RS05055
Position (kb) 1063
1064
1065 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1063.379 kb on + strand, within ABZR87_RS05045 at 1063.426 kb on + strand, within ABZR87_RS05045 at 1063.426 kb on + strand, within ABZR87_RS05045 at 1063.426 kb on + strand, within ABZR87_RS05045 at 1063.556 kb on + strand, within ABZR87_RS05045 at 1063.646 kb on + strand, within ABZR87_RS05045 at 1063.646 kb on + strand, within ABZR87_RS05045 at 1063.646 kb on + strand, within ABZR87_RS05045 at 1063.646 kb on + strand, within ABZR87_RS05045 at 1063.646 kb on + strand, within ABZR87_RS05045 at 1063.646 kb on + strand, within ABZR87_RS05045 at 1063.646 kb on + strand, within ABZR87_RS05045 at 1063.646 kb on + strand, within ABZR87_RS05045 at 1063.646 kb on + strand, within ABZR87_RS05045 at 1063.850 kb on + strand, within ABZR87_RS05050 at 1063.996 kb on + strand, within ABZR87_RS05050 at 1063.998 kb on + strand, within ABZR87_RS05050 at 1063.998 kb on + strand, within ABZR87_RS05050 at 1064.154 kb on + strand, within ABZR87_RS05050 at 1064.313 kb on + strand, within ABZR87_RS05050 at 1064.313 kb on + strand, within ABZR87_RS05050 at 1064.344 kb on + strand, within ABZR87_RS05050 at 1064.344 kb on + strand, within ABZR87_RS05050 at 1064.699 kb on + strand at 1064.699 kb on + strand at 1064.715 kb on + strand at 1064.719 kb on + strand at 1064.719 kb on + strand at 1064.719 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,063,379 + ABZR87_RS05045 0.31 -0.8 1,063,426 + ABZR87_RS05045 0.41 +0.1 1,063,426 + ABZR87_RS05045 0.41 +0.1 1,063,426 + ABZR87_RS05045 0.41 +2.1 1,063,556 + ABZR87_RS05045 0.68 -1.3 1,063,646 + ABZR87_RS05045 0.86 -0.4 1,063,646 + ABZR87_RS05045 0.86 -0.0 1,063,646 + ABZR87_RS05045 0.86 +1.4 1,063,646 + ABZR87_RS05045 0.86 -0.2 1,063,646 + ABZR87_RS05045 0.86 -0.3 1,063,646 + ABZR87_RS05045 0.86 -1.0 1,063,646 + ABZR87_RS05045 0.86 +1.0 1,063,646 + ABZR87_RS05045 0.86 +0.6 1,063,646 + ABZR87_RS05045 0.86 +0.6 1,063,850 + ABZR87_RS05050 0.14 +0.4 1,063,996 + ABZR87_RS05050 0.30 -0.5 1,063,998 + ABZR87_RS05050 0.30 -0.9 1,063,998 + ABZR87_RS05050 0.30 +0.7 1,064,154 + ABZR87_RS05050 0.46 +0.6 1,064,313 + ABZR87_RS05050 0.63 -0.4 1,064,313 + ABZR87_RS05050 0.63 +0.3 1,064,344 + ABZR87_RS05050 0.66 -0.7 1,064,344 + ABZR87_RS05050 0.66 -0.5 1,064,699 + +0.2 1,064,699 + -0.1 1,064,715 + -3.0 1,064,719 + +2.9 1,064,719 + -2.0 1,064,719 + +0.9
Or see this region's nucleotide sequence