Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04765 and ABZR87_RS04770 are separated by 277 nucleotides ABZR87_RS04770 and ABZR87_RS04775 are separated by 702 nucleotides
ABZR87_RS04765: ABZR87_RS04765 - amino acid ABC transporter substrate-binding protein, at 993,097 to 994,005
_RS04765
ABZR87_RS04770: ABZR87_RS04770 - acyl-CoA dehydrogenase family protein, at 994,283 to 995,944
_RS04770
ABZR87_RS04775: ABZR87_RS04775 - putative Ig domain-containing protein, at 996,647 to 1,001,599
_RS04775
Position (kb) 994
995
996 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 993.341 kb on + strand, within ABZR87_RS04765 at 993.341 kb on + strand, within ABZR87_RS04765 at 993.342 kb on - strand, within ABZR87_RS04765 at 993.342 kb on - strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.612 kb on - strand, within ABZR87_RS04765 at 993.612 kb on - strand, within ABZR87_RS04765 at 993.612 kb on - strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.836 kb on + strand, within ABZR87_RS04765 at 993.837 kb on - strand, within ABZR87_RS04765 at 993.837 kb on - strand, within ABZR87_RS04765 at 993.837 kb on - strand, within ABZR87_RS04765 at 994.030 kb on - strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.038 kb on - strand at 994.038 kb on - strand at 994.038 kb on - strand at 994.155 kb on - strand at 994.155 kb on - strand at 994.155 kb on - strand at 994.155 kb on - strand at 994.171 kb on + strand at 994.171 kb on + strand at 994.173 kb on + strand at 994.174 kb on - strand at 994.203 kb on - strand at 994.284 kb on + strand at 994.284 kb on + strand at 994.284 kb on + strand at 994.284 kb on + strand at 994.285 kb on - strand at 994.285 kb on - strand at 994.659 kb on + strand, within ABZR87_RS04770 at 994.710 kb on + strand, within ABZR87_RS04770 at 994.710 kb on + strand, within ABZR87_RS04770 at 994.710 kb on + strand, within ABZR87_RS04770 at 994.711 kb on - strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.313 kb on + strand, within ABZR87_RS04770 at 995.314 kb on - strand, within ABZR87_RS04770 at 995.314 kb on - strand, within ABZR87_RS04770 at 995.314 kb on - strand, within ABZR87_RS04770 at 995.314 kb on - strand, within ABZR87_RS04770 at 995.314 kb on - strand, within ABZR87_RS04770 at 995.314 kb on - strand, within ABZR87_RS04770 at 995.314 kb on - strand, within ABZR87_RS04770 at 995.466 kb on + strand, within ABZR87_RS04770 at 995.467 kb on - strand, within ABZR87_RS04770 at 995.584 kb on - strand, within ABZR87_RS04770 at 995.748 kb on + strand, within ABZR87_RS04770 at 995.748 kb on + strand, within ABZR87_RS04770 at 995.748 kb on + strand, within ABZR87_RS04770 at 995.748 kb on + strand, within ABZR87_RS04770 at 995.748 kb on + strand, within ABZR87_RS04770 at 995.749 kb on - strand, within ABZR87_RS04770 at 995.749 kb on - strand, within ABZR87_RS04770 at 995.749 kb on - strand, within ABZR87_RS04770 at 995.749 kb on - strand, within ABZR87_RS04770 at 995.749 kb on - strand, within ABZR87_RS04770 at 995.749 kb on - strand, within ABZR87_RS04770 at 995.749 kb on - strand, within ABZR87_RS04770 at 995.749 kb on - strand, within ABZR87_RS04770 at 995.749 kb on - strand, within ABZR87_RS04770 at 995.987 kb on + strand at 995.987 kb on + strand at 995.987 kb on + strand at 995.987 kb on + strand at 995.987 kb on + strand at 995.987 kb on + strand at 995.987 kb on + strand at 995.988 kb on - strand at 995.988 kb on - strand at 995.988 kb on - strand at 995.988 kb on - strand at 995.988 kb on - strand at 996.027 kb on + strand at 996.042 kb on + strand at 996.042 kb on + strand at 996.042 kb on + strand at 996.042 kb on + strand at 996.042 kb on + strand at 996.043 kb on - strand at 996.087 kb on + strand at 996.087 kb on + strand at 996.088 kb on - strand at 996.088 kb on - strand at 996.088 kb on - strand at 996.109 kb on + strand at 996.109 kb on + strand at 996.109 kb on + strand at 996.110 kb on - strand at 996.110 kb on - strand at 996.158 kb on - strand at 996.158 kb on - strand at 996.161 kb on - strand at 996.161 kb on - strand at 996.205 kb on + strand at 996.205 kb on + strand at 996.220 kb on - strand at 996.258 kb on + strand at 996.259 kb on - strand at 996.259 kb on - strand at 996.314 kb on + strand at 996.314 kb on + strand at 996.314 kb on + strand at 996.314 kb on + strand at 996.314 kb on + strand at 996.315 kb on - strand at 996.315 kb on - strand at 996.315 kb on - strand at 996.315 kb on - strand at 996.328 kb on + strand at 996.328 kb on + strand at 996.329 kb on - strand at 996.329 kb on - strand at 996.340 kb on - strand at 996.364 kb on + strand at 996.373 kb on - strand at 996.398 kb on + strand at 996.399 kb on - strand at 996.410 kb on - strand at 996.410 kb on - strand at 996.410 kb on - strand at 996.422 kb on + strand at 996.484 kb on + strand at 996.484 kb on + strand at 996.484 kb on + strand at 996.484 kb on + strand at 996.485 kb on - strand at 996.485 kb on - strand at 996.485 kb on - strand at 996.489 kb on - strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.540 kb on + strand at 996.540 kb on + strand at 996.540 kb on + strand at 996.541 kb on - strand at 996.541 kb on - strand at 996.541 kb on - strand at 996.617 kb on + strand at 996.618 kb on - strand at 996.706 kb on - strand at 996.797 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 996.798 kb on - strand at 996.798 kb on - strand at 996.798 kb on - strand at 996.798 kb on - strand at 996.798 kb on - strand at 996.798 kb on - strand at 996.798 kb on - strand at 996.798 kb on - strand at 996.800 kb on - strand at 996.875 kb on + strand at 996.875 kb on + strand at 996.875 kb on + strand at 996.876 kb on - strand at 996.876 kb on - strand at 996.887 kb on - strand at 996.916 kb on + strand at 996.916 kb on + strand at 996.922 kb on - strand at 996.922 kb on - strand at 996.929 kb on + strand at 996.929 kb on + strand at 996.929 kb on + strand at 996.929 kb on + strand at 996.930 kb on - strand at 996.930 kb on - strand at 996.930 kb on - strand at 996.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 993,341 + ABZR87_RS04765 0.27 +0.7 993,341 + ABZR87_RS04765 0.27 +0.9 993,342 - ABZR87_RS04765 0.27 +1.9 993,342 - ABZR87_RS04765 0.27 -1.4 993,611 + ABZR87_RS04765 0.57 -1.2 993,611 + ABZR87_RS04765 0.57 +2.6 993,611 + ABZR87_RS04765 0.57 -0.1 993,611 + ABZR87_RS04765 0.57 +1.8 993,611 + ABZR87_RS04765 0.57 -1.8 993,612 - ABZR87_RS04765 0.57 -0.2 993,612 - ABZR87_RS04765 0.57 +1.4 993,612 - ABZR87_RS04765 0.57 +1.5 993,734 + ABZR87_RS04765 0.70 -0.2 993,734 + ABZR87_RS04765 0.70 +0.7 993,734 + ABZR87_RS04765 0.70 -0.6 993,734 + ABZR87_RS04765 0.70 -1.9 993,734 + ABZR87_RS04765 0.70 +0.7 993,734 + ABZR87_RS04765 0.70 -0.7 993,734 + ABZR87_RS04765 0.70 -0.4 993,735 - ABZR87_RS04765 0.70 -0.1 993,735 - ABZR87_RS04765 0.70 -1.5 993,735 - ABZR87_RS04765 0.70 +0.3 993,735 - ABZR87_RS04765 0.70 -1.8 993,735 - ABZR87_RS04765 0.70 -0.9 993,735 - ABZR87_RS04765 0.70 -0.9 993,735 - ABZR87_RS04765 0.70 +0.7 993,735 - ABZR87_RS04765 0.70 -0.5 993,735 - ABZR87_RS04765 0.70 +0.2 993,735 - ABZR87_RS04765 0.70 +0.5 993,735 - ABZR87_RS04765 0.70 -0.4 993,735 - ABZR87_RS04765 0.70 +0.5 993,735 - ABZR87_RS04765 0.70 -0.1 993,735 - ABZR87_RS04765 0.70 -0.1 993,735 - ABZR87_RS04765 0.70 -0.7 993,735 - ABZR87_RS04765 0.70 +0.1 993,836 + ABZR87_RS04765 0.81 +1.1 993,837 - ABZR87_RS04765 0.81 +0.1 993,837 - ABZR87_RS04765 0.81 -0.5 993,837 - ABZR87_RS04765 0.81 +0.9 994,030 - +0.2 994,037 + -1.6 994,037 + +1.1 994,038 - -0.9 994,038 - -1.1 994,038 - +1.8 994,155 - -0.1 994,155 - -0.7 994,155 - -0.7 994,155 - +0.4 994,171 + -0.4 994,171 + +0.9 994,173 + +0.1 994,174 - +0.9 994,203 - -0.2 994,284 + -0.2 994,284 + -0.1 994,284 + +1.0 994,284 + +0.4 994,285 - +1.4 994,285 - -0.3 994,659 + ABZR87_RS04770 0.23 -1.0 994,710 + ABZR87_RS04770 0.26 -0.4 994,710 + ABZR87_RS04770 0.26 -1.4 994,710 + ABZR87_RS04770 0.26 -0.4 994,711 - ABZR87_RS04770 0.26 -0.5 995,313 + ABZR87_RS04770 0.62 -0.1 995,313 + ABZR87_RS04770 0.62 +0.0 995,313 + ABZR87_RS04770 0.62 -0.7 995,313 + ABZR87_RS04770 0.62 +0.1 995,313 + ABZR87_RS04770 0.62 +0.4 995,313 + ABZR87_RS04770 0.62 -0.4 995,313 + ABZR87_RS04770 0.62 +0.1 995,313 + ABZR87_RS04770 0.62 -0.6 995,313 + ABZR87_RS04770 0.62 +0.9 995,313 + ABZR87_RS04770 0.62 -0.5 995,313 + ABZR87_RS04770 0.62 -0.7 995,314 - ABZR87_RS04770 0.62 +0.4 995,314 - ABZR87_RS04770 0.62 -0.8 995,314 - ABZR87_RS04770 0.62 -1.1 995,314 - ABZR87_RS04770 0.62 +0.5 995,314 - ABZR87_RS04770 0.62 +0.1 995,314 - ABZR87_RS04770 0.62 +0.3 995,314 - ABZR87_RS04770 0.62 -0.3 995,466 + ABZR87_RS04770 0.71 -0.8 995,467 - ABZR87_RS04770 0.71 +0.0 995,584 - ABZR87_RS04770 0.78 +0.8 995,748 + ABZR87_RS04770 0.88 -1.3 995,748 + ABZR87_RS04770 0.88 +0.7 995,748 + ABZR87_RS04770 0.88 -0.6 995,748 + ABZR87_RS04770 0.88 -1.1 995,748 + ABZR87_RS04770 0.88 -2.5 995,749 - ABZR87_RS04770 0.88 +0.1 995,749 - ABZR87_RS04770 0.88 -1.9 995,749 - ABZR87_RS04770 0.88 +2.1 995,749 - ABZR87_RS04770 0.88 +1.7 995,749 - ABZR87_RS04770 0.88 +0.1 995,749 - ABZR87_RS04770 0.88 -0.0 995,749 - ABZR87_RS04770 0.88 +0.4 995,749 - ABZR87_RS04770 0.88 +1.0 995,749 - ABZR87_RS04770 0.88 +0.5 995,987 + +0.7 995,987 + +0.1 995,987 + +1.7 995,987 + -0.4 995,987 + -0.4 995,987 + -0.9 995,987 + +0.6 995,988 - +0.2 995,988 - -0.6 995,988 - -1.9 995,988 - +0.5 995,988 - -1.6 996,027 + -0.4 996,042 + +0.1 996,042 + +0.2 996,042 + +1.9 996,042 + -0.8 996,042 + +0.5 996,043 - +0.6 996,087 + -0.4 996,087 + -0.0 996,088 - +0.4 996,088 - +0.7 996,088 - -0.7 996,109 + -0.1 996,109 + -0.6 996,109 + +0.1 996,110 - +1.9 996,110 - +0.6 996,158 - +0.2 996,158 - -2.2 996,161 - +1.5 996,161 - +0.2 996,205 + +0.1 996,205 + -0.8 996,220 - -0.2 996,258 + -1.7 996,259 - +0.9 996,259 - -1.3 996,314 + -1.6 996,314 + +1.5 996,314 + -2.1 996,314 + +1.1 996,314 + -0.0 996,315 - -0.5 996,315 - -0.1 996,315 - -0.4 996,315 - -1.9 996,328 + +0.2 996,328 + -0.3 996,329 - +0.8 996,329 - +0.3 996,340 - -0.5 996,364 + +0.4 996,373 - +4.6 996,398 + +1.0 996,399 - -1.4 996,410 - +0.6 996,410 - +0.5 996,410 - +0.9 996,422 + -3.0 996,484 + -0.6 996,484 + +0.3 996,484 + -0.7 996,484 + -0.5 996,485 - -1.1 996,485 - -0.7 996,485 - +0.5 996,489 - +1.3 996,531 + +0.5 996,531 + -1.5 996,531 + -0.8 996,531 + -0.9 996,531 + -2.0 996,532 - +5.8 996,532 - +1.0 996,532 - +2.4 996,532 - -0.5 996,532 - +0.9 996,532 - -1.4 996,540 + +3.3 996,540 + +0.0 996,540 + -0.8 996,541 - -0.4 996,541 - +0.2 996,541 - -1.1 996,617 + -1.2 996,618 - +0.6 996,706 - -0.5 996,797 + +4.5 996,797 + -0.4 996,797 + -2.1 996,797 + +0.1 996,797 + -0.9 996,797 + +0.3 996,797 + +0.3 996,797 + -1.0 996,797 + +1.4 996,797 + +0.5 996,798 - +0.0 996,798 - -0.6 996,798 - +0.1 996,798 - -4.2 996,798 - +0.1 996,798 - -0.9 996,798 - +1.3 996,798 - +3.5 996,800 - +0.6 996,875 + -0.5 996,875 + +2.0 996,875 + +6.0 996,876 - +1.4 996,876 - -0.5 996,887 - +3.4 996,916 + -0.3 996,916 + -1.0 996,922 - +0.7 996,922 - -0.9 996,929 + -0.6 996,929 + +0.7 996,929 + +0.0 996,929 + -0.7 996,930 - +0.6 996,930 - -0.6 996,930 - -1.7 996,930 - -0.8
Or see this region's nucleotide sequence