Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03090

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03085 and ABZR87_RS03090 are separated by 282 nucleotidesABZR87_RS03090 and ABZR87_RS03095 are separated by 29 nucleotides ABZR87_RS03085: ABZR87_RS03085 - ABC transporter substrate-binding protein, at 649,222 to 650,313 _RS03085 ABZR87_RS03090: ABZR87_RS03090 - helix-turn-helix transcriptional regulator, at 650,596 to 651,393 _RS03090 ABZR87_RS03095: ABZR87_RS03095 - ATP-binding protein, at 651,423 to 652,763 _RS03095 Position (kb) 650 651 652Strain fitness (log2 ratio) -2 -1 0 1 2 3at 649.646 kb on + strand, within ABZR87_RS03085at 649.749 kb on + strand, within ABZR87_RS03085at 649.749 kb on + strand, within ABZR87_RS03085at 649.790 kb on + strand, within ABZR87_RS03085at 649.790 kb on + strand, within ABZR87_RS03085at 649.790 kb on + strand, within ABZR87_RS03085at 649.790 kb on + strand, within ABZR87_RS03085at 649.791 kb on - strand, within ABZR87_RS03085at 649.791 kb on - strand, within ABZR87_RS03085at 649.850 kb on + strand, within ABZR87_RS03085at 649.850 kb on + strand, within ABZR87_RS03085at 649.851 kb on - strand, within ABZR87_RS03085at 649.851 kb on - strand, within ABZR87_RS03085at 649.919 kb on + strand, within ABZR87_RS03085at 649.919 kb on + strand, within ABZR87_RS03085at 649.920 kb on - strand, within ABZR87_RS03085at 649.920 kb on - strand, within ABZR87_RS03085at 649.920 kb on - strand, within ABZR87_RS03085at 650.179 kb on + strand, within ABZR87_RS03085at 650.179 kb on + strand, within ABZR87_RS03085at 650.180 kb on - strand, within ABZR87_RS03085at 650.180 kb on - strand, within ABZR87_RS03085at 650.180 kb on - strand, within ABZR87_RS03085at 650.180 kb on - strand, within ABZR87_RS03085at 650.180 kb on - strand, within ABZR87_RS03085at 650.180 kb on - strand, within ABZR87_RS03085at 650.198 kb on + strand, within ABZR87_RS03085at 650.198 kb on + strand, within ABZR87_RS03085at 650.198 kb on + strand, within ABZR87_RS03085at 650.198 kb on + strand, within ABZR87_RS03085at 650.198 kb on + strand, within ABZR87_RS03085at 650.198 kb on - strand, within ABZR87_RS03085at 650.199 kb on - strand, within ABZR87_RS03085at 650.298 kb on + strandat 650.298 kb on + strandat 650.298 kb on + strandat 650.298 kb on + strandat 650.298 kb on + strandat 650.299 kb on - strandat 650.299 kb on - strandat 650.481 kb on + strandat 650.481 kb on + strandat 650.481 kb on + strandat 650.482 kb on - strandat 650.482 kb on - strandat 650.482 kb on - strandat 650.482 kb on - strandat 650.482 kb on - strandat 650.562 kb on - strandat 650.562 kb on - strandat 650.562 kb on - strandat 650.668 kb on + strandat 650.668 kb on + strandat 650.668 kb on + strandat 650.668 kb on + strandat 650.668 kb on + strandat 650.669 kb on - strandat 650.669 kb on - strandat 650.734 kb on + strand, within ABZR87_RS03090at 650.734 kb on + strand, within ABZR87_RS03090at 650.734 kb on + strand, within ABZR87_RS03090at 650.734 kb on + strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.736 kb on + strand, within ABZR87_RS03090at 650.736 kb on + strand, within ABZR87_RS03090at 650.737 kb on - strand, within ABZR87_RS03090at 650.824 kb on + strand, within ABZR87_RS03090at 650.862 kb on + strand, within ABZR87_RS03090at 650.862 kb on + strand, within ABZR87_RS03090at 650.862 kb on + strand, within ABZR87_RS03090at 650.862 kb on + strand, within ABZR87_RS03090at 650.863 kb on - strand, within ABZR87_RS03090at 650.863 kb on - strand, within ABZR87_RS03090at 650.863 kb on - strand, within ABZR87_RS03090at 650.863 kb on - strand, within ABZR87_RS03090at 650.869 kb on + strand, within ABZR87_RS03090at 650.869 kb on + strand, within ABZR87_RS03090at 650.869 kb on + strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 651.298 kb on + strand, within ABZR87_RS03090at 651.298 kb on + strand, within ABZR87_RS03090at 651.299 kb on - strand, within ABZR87_RS03090at 651.299 kb on - strand, within ABZR87_RS03090at 651.299 kb on - strand, within ABZR87_RS03090at 651.299 kb on - strand, within ABZR87_RS03090at 651.400 kb on + strandat 651.400 kb on + strandat 651.401 kb on - strandat 651.424 kb on + strandat 651.425 kb on - strandat 651.524 kb on - strandat 651.704 kb on + strand, within ABZR87_RS03095at 651.704 kb on + strand, within ABZR87_RS03095at 651.705 kb on - strand, within ABZR87_RS03095at 651.705 kb on - strand, within ABZR87_RS03095at 651.715 kb on + strand, within ABZR87_RS03095at 651.716 kb on - strand, within ABZR87_RS03095at 652.195 kb on + strand, within ABZR87_RS03095at 652.195 kb on + strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.346 kb on - strand, within ABZR87_RS03095at 652.346 kb on - strand, within ABZR87_RS03095at 652.369 kb on + strand, within ABZR87_RS03095at 652.369 kb on + strand, within ABZR87_RS03095at 652.370 kb on - strand, within ABZR87_RS03095at 652.370 kb on - strand, within ABZR87_RS03095at 652.376 kb on + strand, within ABZR87_RS03095at 652.377 kb on - strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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649,646 + ABZR87_RS03085 0.39 -1.2
649,749 + ABZR87_RS03085 0.48 +1.3
649,749 + ABZR87_RS03085 0.48 +0.1
649,790 + ABZR87_RS03085 0.52 -0.0
649,790 + ABZR87_RS03085 0.52 +0.7
649,790 + ABZR87_RS03085 0.52 -1.0
649,790 + ABZR87_RS03085 0.52 -0.4
649,791 - ABZR87_RS03085 0.52 -0.6
649,791 - ABZR87_RS03085 0.52 -1.6
649,850 + ABZR87_RS03085 0.58 +1.6
649,850 + ABZR87_RS03085 0.58 -0.2
649,851 - ABZR87_RS03085 0.58 +0.3
649,851 - ABZR87_RS03085 0.58 +0.6
649,919 + ABZR87_RS03085 0.64 -0.9
649,919 + ABZR87_RS03085 0.64 -0.5
649,920 - ABZR87_RS03085 0.64 -1.7
649,920 - ABZR87_RS03085 0.64 +0.5
649,920 - ABZR87_RS03085 0.64 -0.7
650,179 + ABZR87_RS03085 0.88 +0.7
650,179 + ABZR87_RS03085 0.88 +0.8
650,180 - ABZR87_RS03085 0.88 -0.1
650,180 - ABZR87_RS03085 0.88 -0.3
650,180 - ABZR87_RS03085 0.88 +0.4
650,180 - ABZR87_RS03085 0.88 +1.0
650,180 - ABZR87_RS03085 0.88 +0.0
650,180 - ABZR87_RS03085 0.88 +2.3
650,198 + ABZR87_RS03085 0.89 +0.6
650,198 + ABZR87_RS03085 0.89 -1.1
650,198 + ABZR87_RS03085 0.89 -0.2
650,198 + ABZR87_RS03085 0.89 +0.4
650,198 + ABZR87_RS03085 0.89 +0.2
650,198 - ABZR87_RS03085 0.89 +0.2
650,199 - ABZR87_RS03085 0.89 -0.6
650,298 + +2.1
650,298 + -0.8
650,298 + -0.8
650,298 + +0.2
650,298 + -0.3
650,299 - +1.9
650,299 - -0.2
650,481 + +1.2
650,481 + +0.8
650,481 + +1.0
650,482 - +0.2
650,482 - -0.7
650,482 - -0.4
650,482 - +0.3
650,482 - -1.0
650,562 - +0.8
650,562 - -1.5
650,562 - +2.8
650,668 + +1.4
650,668 + -0.7
650,668 + +0.6
650,668 + +1.7
650,668 + +0.1
650,669 - -1.1
650,669 - +1.4
650,734 + ABZR87_RS03090 0.17 -1.1
650,734 + ABZR87_RS03090 0.17 +1.1
650,734 + ABZR87_RS03090 0.17 +3.0
650,734 + ABZR87_RS03090 0.17 +0.3
650,735 - ABZR87_RS03090 0.17 -0.5
650,735 - ABZR87_RS03090 0.17 -0.0
650,735 - ABZR87_RS03090 0.17 +1.7
650,735 - ABZR87_RS03090 0.17 -0.2
650,735 - ABZR87_RS03090 0.17 +0.8
650,735 - ABZR87_RS03090 0.17 +0.0
650,736 + ABZR87_RS03090 0.18 -1.7
650,736 + ABZR87_RS03090 0.18 +2.1
650,737 - ABZR87_RS03090 0.18 +0.6
650,824 + ABZR87_RS03090 0.29 -0.0
650,862 + ABZR87_RS03090 0.33 +0.8
650,862 + ABZR87_RS03090 0.33 -1.6
650,862 + ABZR87_RS03090 0.33 +1.1
650,862 + ABZR87_RS03090 0.33 +1.2
650,863 - ABZR87_RS03090 0.33 +0.1
650,863 - ABZR87_RS03090 0.33 +0.6
650,863 - ABZR87_RS03090 0.33 -0.2
650,863 - ABZR87_RS03090 0.33 -0.0
650,869 + ABZR87_RS03090 0.34 -0.3
650,869 + ABZR87_RS03090 0.34 +0.3
650,869 + ABZR87_RS03090 0.34 -1.3
650,870 - ABZR87_RS03090 0.34 -0.5
650,870 - ABZR87_RS03090 0.34 +0.8
650,870 - ABZR87_RS03090 0.34 -1.6
650,870 - ABZR87_RS03090 0.34 +0.3
650,870 - ABZR87_RS03090 0.34 -0.2
650,870 - ABZR87_RS03090 0.34 -0.3
650,870 - ABZR87_RS03090 0.34 -0.1
650,870 - ABZR87_RS03090 0.34 -0.9
650,870 - ABZR87_RS03090 0.34 +1.1
650,870 - ABZR87_RS03090 0.34 -0.2
650,870 - ABZR87_RS03090 0.34 +1.7
651,298 + ABZR87_RS03090 0.88 -1.1
651,298 + ABZR87_RS03090 0.88 +0.0
651,299 - ABZR87_RS03090 0.88 -0.4
651,299 - ABZR87_RS03090 0.88 +0.7
651,299 - ABZR87_RS03090 0.88 -0.4
651,299 - ABZR87_RS03090 0.88 +0.4
651,400 + -0.8
651,400 + +0.7
651,401 - -0.1
651,424 + -1.9
651,425 - +2.8
651,524 - -0.1
651,704 + ABZR87_RS03095 0.21 -1.1
651,704 + ABZR87_RS03095 0.21 +0.8
651,705 - ABZR87_RS03095 0.21 +0.8
651,705 - ABZR87_RS03095 0.21 +0.2
651,715 + ABZR87_RS03095 0.22 -0.6
651,716 - ABZR87_RS03095 0.22 +0.1
652,195 + ABZR87_RS03095 0.58 -0.4
652,195 + ABZR87_RS03095 0.58 +0.4
652,196 - ABZR87_RS03095 0.58 +0.7
652,196 - ABZR87_RS03095 0.58 -0.2
652,196 - ABZR87_RS03095 0.58 +0.1
652,196 - ABZR87_RS03095 0.58 -0.2
652,345 + ABZR87_RS03095 0.69 +0.3
652,345 + ABZR87_RS03095 0.69 -2.6
652,345 + ABZR87_RS03095 0.69 -0.2
652,345 + ABZR87_RS03095 0.69 +0.3
652,346 - ABZR87_RS03095 0.69 -0.3
652,346 - ABZR87_RS03095 0.69 +0.2
652,369 + ABZR87_RS03095 0.71 +0.1
652,369 + ABZR87_RS03095 0.71 +0.5
652,370 - ABZR87_RS03095 0.71 +0.8
652,370 - ABZR87_RS03095 0.71 +1.0
652,376 + ABZR87_RS03095 0.71 +1.8
652,377 - ABZR87_RS03095 0.71 +0.4
652,387 + ABZR87_RS03095 0.72 -0.2
652,387 + ABZR87_RS03095 0.72 +1.3
652,387 + ABZR87_RS03095 0.72 -0.7
652,387 + ABZR87_RS03095 0.72 -0.7
652,388 - ABZR87_RS03095 0.72 +0.5
652,388 - ABZR87_RS03095 0.72 +0.1
652,388 - ABZR87_RS03095 0.72 +0.1
652,388 - ABZR87_RS03095 0.72 +0.1
652,388 - ABZR87_RS03095 0.72 -0.5

Or see this region's nucleotide sequence