Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02650

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02640 and ABZR87_RS02645 are separated by 64 nucleotidesABZR87_RS02645 and ABZR87_RS02650 are separated by 7 nucleotidesABZR87_RS02650 and ABZR87_RS02655 are separated by 95 nucleotidesABZR87_RS02655 and ABZR87_RS02660 are separated by 8 nucleotides ABZR87_RS02640: ABZR87_RS02640 - diaminopimelate decarboxylase, at 561,405 to 562,664 _RS02640 ABZR87_RS02645: ABZR87_RS02645 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 562,729 to 563,385 _RS02645 ABZR87_RS02650: ABZR87_RS02650 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 563,393 to 564,388 _RS02650 ABZR87_RS02655: ABZR87_RS02655 - anti-sigma factor, at 564,484 to 565,344 _RS02655 ABZR87_RS02660: ABZR87_RS02660 - RNA polymerase sigma factor, at 565,353 to 565,934 _RS02660 Position (kb) 563 564 565Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 562.419 kb on + strand, within ABZR87_RS02640at 562.420 kb on - strand, within ABZR87_RS02640at 562.548 kb on + strandat 562.548 kb on + strandat 562.548 kb on + strandat 562.549 kb on - strandat 562.549 kb on - strandat 562.662 kb on + strandat 562.663 kb on - strandat 562.663 kb on - strandat 562.829 kb on + strand, within ABZR87_RS02645at 562.876 kb on + strand, within ABZR87_RS02645at 562.878 kb on - strand, within ABZR87_RS02645at 562.878 kb on - strand, within ABZR87_RS02645at 562.878 kb on - strand, within ABZR87_RS02645at 562.907 kb on + strand, within ABZR87_RS02645at 562.907 kb on + strand, within ABZR87_RS02645at 562.908 kb on - strand, within ABZR87_RS02645at 563.123 kb on + strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.405 kb on - strandat 563.424 kb on + strandat 563.424 kb on + strandat 563.425 kb on - strandat 563.425 kb on - strandat 563.446 kb on - strandat 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.575 kb on - strand, within ABZR87_RS02650at 563.583 kb on + strand, within ABZR87_RS02650at 563.584 kb on - strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.733 kb on + strand, within ABZR87_RS02650at 563.796 kb on + strand, within ABZR87_RS02650at 563.797 kb on - strand, within ABZR87_RS02650at 563.797 kb on - strand, within ABZR87_RS02650at 563.797 kb on - strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.971 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.124 kb on - strand, within ABZR87_RS02650at 564.124 kb on - strand, within ABZR87_RS02650at 564.135 kb on + strand, within ABZR87_RS02650at 564.135 kb on + strand, within ABZR87_RS02650at 564.135 kb on + strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.154 kb on - strand, within ABZR87_RS02650at 564.154 kb on - strand, within ABZR87_RS02650at 564.180 kb on + strand, within ABZR87_RS02650at 564.181 kb on - strand, within ABZR87_RS02650at 564.480 kb on - strandat 564.480 kb on - strandat 564.480 kb on - strandat 564.486 kb on - strandat 564.521 kb on + strandat 564.522 kb on - strandat 564.611 kb on + strand, within ABZR87_RS02655at 564.611 kb on + strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.764 kb on + strand, within ABZR87_RS02655at 564.764 kb on + strand, within ABZR87_RS02655at 564.765 kb on - strand, within ABZR87_RS02655at 564.765 kb on - strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.305 kb on - strandat 565.323 kb on + strandat 565.323 kb on + strandat 565.324 kb on - strandat 565.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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562,419 + ABZR87_RS02640 0.80 -2.2
562,420 - ABZR87_RS02640 0.81 -2.3
562,548 + -2.7
562,548 + -2.5
562,548 + -0.8
562,549 - -3.6
562,549 - -2.5
562,662 + +0.0
562,663 - +0.2
562,663 - +3.0
562,829 + ABZR87_RS02645 0.15 -0.8
562,876 + ABZR87_RS02645 0.22 -0.7
562,878 - ABZR87_RS02645 0.23 +0.7
562,878 - ABZR87_RS02645 0.23 -0.2
562,878 - ABZR87_RS02645 0.23 +1.1
562,907 + ABZR87_RS02645 0.27 -0.3
562,907 + ABZR87_RS02645 0.27 +0.7
562,908 - ABZR87_RS02645 0.27 -0.6
563,123 + ABZR87_RS02645 0.60 -1.5
563,124 - ABZR87_RS02645 0.60 -0.5
563,124 - ABZR87_RS02645 0.60 +1.4
563,124 - ABZR87_RS02645 0.60 -1.0
563,124 - ABZR87_RS02645 0.60 +0.3
563,405 - -0.1
563,424 + -0.4
563,424 + +1.3
563,425 - -0.8
563,425 - +1.0
563,446 - -1.0
563,574 + ABZR87_RS02650 0.18 +0.1
563,574 + ABZR87_RS02650 0.18 -1.3
563,574 + ABZR87_RS02650 0.18 +0.3
563,574 + ABZR87_RS02650 0.18 +0.7
563,574 + ABZR87_RS02650 0.18 -0.9
563,575 - ABZR87_RS02650 0.18 -0.5
563,583 + ABZR87_RS02650 0.19 +0.4
563,584 - ABZR87_RS02650 0.19 +2.6
563,673 + ABZR87_RS02650 0.28 -0.3
563,673 + ABZR87_RS02650 0.28 -0.3
563,673 + ABZR87_RS02650 0.28 -0.0
563,673 + ABZR87_RS02650 0.28 +0.9
563,673 + ABZR87_RS02650 0.28 +0.1
563,673 + ABZR87_RS02650 0.28 -0.4
563,674 - ABZR87_RS02650 0.28 -0.9
563,674 - ABZR87_RS02650 0.28 +0.0
563,674 - ABZR87_RS02650 0.28 -1.7
563,674 - ABZR87_RS02650 0.28 -0.3
563,674 - ABZR87_RS02650 0.28 -0.9
563,674 - ABZR87_RS02650 0.28 -0.6
563,674 - ABZR87_RS02650 0.28 -2.6
563,733 + ABZR87_RS02650 0.34 +0.6
563,796 + ABZR87_RS02650 0.40 -0.8
563,797 - ABZR87_RS02650 0.41 +0.4
563,797 - ABZR87_RS02650 0.41 +0.2
563,797 - ABZR87_RS02650 0.41 -1.5
563,868 + ABZR87_RS02650 0.48 -1.3
563,868 + ABZR87_RS02650 0.48 +0.7
563,868 + ABZR87_RS02650 0.48 -1.9
563,868 + ABZR87_RS02650 0.48 +0.5
563,869 - ABZR87_RS02650 0.48 +1.1
563,869 - ABZR87_RS02650 0.48 -0.7
563,869 - ABZR87_RS02650 0.48 -0.2
563,869 - ABZR87_RS02650 0.48 -0.2
563,869 - ABZR87_RS02650 0.48 +0.0
563,869 - ABZR87_RS02650 0.48 +1.0
563,869 - ABZR87_RS02650 0.48 +0.1
563,971 - ABZR87_RS02650 0.58 -0.8
564,019 - ABZR87_RS02650 0.63 +0.6
564,019 - ABZR87_RS02650 0.63 +0.9
564,019 - ABZR87_RS02650 0.63 -1.7
564,019 - ABZR87_RS02650 0.63 -1.0
564,019 - ABZR87_RS02650 0.63 -0.4
564,124 - ABZR87_RS02650 0.73 +0.3
564,124 - ABZR87_RS02650 0.73 +0.4
564,135 + ABZR87_RS02650 0.74 +0.1
564,135 + ABZR87_RS02650 0.74 -0.1
564,135 + ABZR87_RS02650 0.74 -1.1
564,136 - ABZR87_RS02650 0.75 +0.2
564,136 - ABZR87_RS02650 0.75 -0.1
564,136 - ABZR87_RS02650 0.75 -0.9
564,136 - ABZR87_RS02650 0.75 +0.4
564,136 - ABZR87_RS02650 0.75 -1.5
564,136 - ABZR87_RS02650 0.75 -1.8
564,136 - ABZR87_RS02650 0.75 +0.2
564,154 - ABZR87_RS02650 0.76 +0.4
564,154 - ABZR87_RS02650 0.76 -0.1
564,180 + ABZR87_RS02650 0.79 -0.9
564,181 - ABZR87_RS02650 0.79 -1.5
564,480 - +0.4
564,480 - +0.9
564,480 - +0.4
564,486 - +0.8
564,521 + -1.6
564,522 - -2.9
564,611 + ABZR87_RS02655 0.15 -2.4
564,611 + ABZR87_RS02655 0.15 -1.7
564,612 - ABZR87_RS02655 0.15 -1.1
564,612 - ABZR87_RS02655 0.15 -3.0
564,612 - ABZR87_RS02655 0.15 -2.2
564,612 - ABZR87_RS02655 0.15 -2.4
564,764 + ABZR87_RS02655 0.33 -4.3
564,764 + ABZR87_RS02655 0.33 -2.1
564,765 - ABZR87_RS02655 0.33 -1.7
564,765 - ABZR87_RS02655 0.33 -3.0
565,256 + ABZR87_RS02655 0.90 -2.0
565,256 + ABZR87_RS02655 0.90 -0.6
565,256 + ABZR87_RS02655 0.90 -2.5
565,256 + ABZR87_RS02655 0.90 -3.2
565,256 + ABZR87_RS02655 0.90 -1.2
565,256 + ABZR87_RS02655 0.90 -3.9
565,256 + ABZR87_RS02655 0.90 -2.0
565,256 + ABZR87_RS02655 0.90 -4.5
565,256 + ABZR87_RS02655 0.90 -2.7
565,256 + ABZR87_RS02655 0.90 -2.4
565,257 - ABZR87_RS02655 0.90 -2.3
565,257 - ABZR87_RS02655 0.90 +0.4
565,257 - ABZR87_RS02655 0.90 -1.8
565,257 - ABZR87_RS02655 0.90 -0.3
565,304 + -2.0
565,304 + -1.6
565,304 + -3.3
565,304 + -2.6
565,304 + -3.8
565,304 + -3.3
565,305 - -0.3
565,323 + -0.9
565,323 + +0.0
565,324 - -3.1
565,324 - -3.7

Or see this region's nucleotide sequence