Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02115 and ABZR87_RS02120 are separated by 74 nucleotides ABZR87_RS02120 and ABZR87_RS02125 are separated by 6 nucleotides ABZR87_RS02125 and ABZR87_RS02130 are separated by 130 nucleotides ABZR87_RS02130 and ABZR87_RS02135 overlap by 4 nucleotides
ABZR87_RS02115: ABZR87_RS02115 - murein transglycosylase A, at 455,298 to 456,452
_RS02115
ABZR87_RS02120: ABZR87_RS02120 - hypothetical protein, at 456,527 to 456,760
_RS02120
ABZR87_RS02125: ABZR87_RS02125 - Co2+/Mg2+ efflux protein ApaG, at 456,767 to 457,141
_RS02125
ABZR87_RS02130: ABZR87_RS02130 - ribulose-phosphate 3-epimerase, at 457,272 to 458,000
_RS02130
ABZR87_RS02135: ABZR87_RS02135 - phosphoglycolate phosphatase, at 457,997 to 458,725
_RS02135
Position (kb) 457
458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 456.491 kb on + strand at 456.491 kb on + strand at 456.491 kb on + strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.849 kb on + strand, within ABZR87_RS02125 at 456.849 kb on + strand, within ABZR87_RS02125 at 456.850 kb on - strand, within ABZR87_RS02125 at 456.850 kb on - strand, within ABZR87_RS02125 at 456.866 kb on - strand, within ABZR87_RS02125 at 456.866 kb on - strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.988 kb on + strand, within ABZR87_RS02125 at 456.988 kb on + strand, within ABZR87_RS02125 at 456.989 kb on - strand, within ABZR87_RS02125 at 456.989 kb on - strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.054 kb on - strand, within ABZR87_RS02125 at 457.054 kb on - strand, within ABZR87_RS02125 at 457.065 kb on + strand, within ABZR87_RS02125 at 457.065 kb on + strand, within ABZR87_RS02125 at 457.066 kb on - strand, within ABZR87_RS02125 at 457.102 kb on - strand, within ABZR87_RS02125 at 457.102 kb on - strand, within ABZR87_RS02125 at 457.131 kb on + strand at 457.132 kb on - strand at 457.132 kb on - strand at 457.154 kb on + strand at 457.154 kb on + strand at 457.154 kb on + strand at 457.154 kb on + strand at 457.155 kb on - strand at 457.155 kb on - strand at 457.155 kb on - strand at 457.155 kb on - strand at 457.227 kb on + strand at 457.227 kb on + strand at 457.227 kb on + strand at 457.227 kb on + strand at 457.228 kb on - strand at 457.228 kb on - strand at 457.228 kb on - strand at 458.153 kb on + strand, within ABZR87_RS02135 at 458.153 kb on + strand, within ABZR87_RS02135 at 458.153 kb on + strand, within ABZR87_RS02135 at 458.153 kb on + strand, within ABZR87_RS02135 at 458.153 kb on + strand, within ABZR87_RS02135 at 458.154 kb on - strand, within ABZR87_RS02135 at 458.154 kb on - strand, within ABZR87_RS02135 at 458.154 kb on - strand, within ABZR87_RS02135 at 458.154 kb on - strand, within ABZR87_RS02135 at 458.154 kb on - strand, within ABZR87_RS02135 at 458.154 kb on - strand, within ABZR87_RS02135 at 458.252 kb on + strand, within ABZR87_RS02135 at 458.252 kb on + strand, within ABZR87_RS02135 at 458.252 kb on + strand, within ABZR87_RS02135 at 458.253 kb on - strand, within ABZR87_RS02135 at 458.253 kb on - strand, within ABZR87_RS02135 at 458.253 kb on - strand, within ABZR87_RS02135 at 458.253 kb on - strand, within ABZR87_RS02135 at 458.264 kb on + strand, within ABZR87_RS02135 at 458.264 kb on + strand, within ABZR87_RS02135 at 458.264 kb on + strand, within ABZR87_RS02135 at 458.264 kb on + strand, within ABZR87_RS02135 at 458.264 kb on + strand, within ABZR87_RS02135 at 458.264 kb on + strand, within ABZR87_RS02135 at 458.264 kb on + strand, within ABZR87_RS02135 at 458.264 kb on + strand, within ABZR87_RS02135 at 458.265 kb on - strand, within ABZR87_RS02135 at 458.265 kb on - strand, within ABZR87_RS02135 at 458.285 kb on + strand, within ABZR87_RS02135 at 458.285 kb on + strand, within ABZR87_RS02135 at 458.285 kb on + strand, within ABZR87_RS02135 at 458.285 kb on + strand, within ABZR87_RS02135 at 458.285 kb on + strand, within ABZR87_RS02135 at 458.286 kb on - strand, within ABZR87_RS02135 at 458.286 kb on - strand, within ABZR87_RS02135 at 458.286 kb on - strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.289 kb on + strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.290 kb on - strand, within ABZR87_RS02135 at 458.297 kb on + strand, within ABZR87_RS02135 at 458.297 kb on + strand, within ABZR87_RS02135 at 458.298 kb on - strand, within ABZR87_RS02135 at 458.298 kb on - strand, within ABZR87_RS02135 at 458.433 kb on - strand, within ABZR87_RS02135 at 458.472 kb on - strand, within ABZR87_RS02135 at 458.594 kb on + strand, within ABZR87_RS02135 at 458.594 kb on + strand, within ABZR87_RS02135 at 458.595 kb on - strand, within ABZR87_RS02135 at 458.595 kb on - strand, within ABZR87_RS02135 at 458.600 kb on + strand, within ABZR87_RS02135 at 458.601 kb on - strand, within ABZR87_RS02135 at 458.617 kb on + strand, within ABZR87_RS02135 at 458.617 kb on + strand, within ABZR87_RS02135 at 458.618 kb on - strand, within ABZR87_RS02135 at 458.618 kb on - strand, within ABZR87_RS02135 at 458.618 kb on - strand, within ABZR87_RS02135 at 458.618 kb on - strand, within ABZR87_RS02135 at 458.618 kb on - strand, within ABZR87_RS02135 at 458.618 kb on - strand, within ABZR87_RS02135 at 458.618 kb on - strand, within ABZR87_RS02135 at 458.618 kb on - strand, within ABZR87_RS02135 at 458.619 kb on + strand, within ABZR87_RS02135 at 458.619 kb on + strand, within ABZR87_RS02135 at 458.619 kb on + strand, within ABZR87_RS02135 at 458.620 kb on - strand, within ABZR87_RS02135 at 458.620 kb on - strand, within ABZR87_RS02135 at 458.620 kb on - strand, within ABZR87_RS02135 at 458.620 kb on - strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.641 kb on + strand, within ABZR87_RS02135 at 458.642 kb on - strand, within ABZR87_RS02135 at 458.642 kb on - strand, within ABZR87_RS02135 at 458.642 kb on - strand, within ABZR87_RS02135 at 458.642 kb on - strand, within ABZR87_RS02135 at 458.642 kb on - strand, within ABZR87_RS02135 at 458.642 kb on - strand, within ABZR87_RS02135 at 458.642 kb on - strand, within ABZR87_RS02135 at 458.642 kb on - strand, within ABZR87_RS02135 at 458.643 kb on + strand, within ABZR87_RS02135 at 458.644 kb on - strand, within ABZR87_RS02135 at 458.644 kb on - strand, within ABZR87_RS02135 at 458.644 kb on - strand, within ABZR87_RS02135 at 458.817 kb on - strand at 458.990 kb on + strand at 458.990 kb on + strand at 458.991 kb on - strand at 458.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 456,491 + -1.6 456,491 + +0.7 456,491 + +1.9 456,492 - +0.0 456,492 - +0.6 456,492 - +0.4 456,492 - -0.5 456,492 - -1.4 456,492 - -2.1 456,849 + ABZR87_RS02125 0.22 -0.5 456,849 + ABZR87_RS02125 0.22 -0.1 456,850 - ABZR87_RS02125 0.22 -0.4 456,850 - ABZR87_RS02125 0.22 +1.5 456,866 - ABZR87_RS02125 0.26 +0.8 456,866 - ABZR87_RS02125 0.26 +0.9 456,900 + ABZR87_RS02125 0.35 +0.4 456,900 + ABZR87_RS02125 0.35 +2.0 456,900 + ABZR87_RS02125 0.35 +1.5 456,900 + ABZR87_RS02125 0.35 -0.7 456,900 + ABZR87_RS02125 0.35 -1.3 456,901 - ABZR87_RS02125 0.36 -1.9 456,901 - ABZR87_RS02125 0.36 -0.1 456,901 - ABZR87_RS02125 0.36 +1.0 456,901 - ABZR87_RS02125 0.36 -1.8 456,988 + ABZR87_RS02125 0.59 -1.0 456,988 + ABZR87_RS02125 0.59 -0.7 456,989 - ABZR87_RS02125 0.59 -1.2 456,989 - ABZR87_RS02125 0.59 +0.8 457,053 + ABZR87_RS02125 0.76 -0.4 457,053 + ABZR87_RS02125 0.76 -0.8 457,053 + ABZR87_RS02125 0.76 +3.2 457,053 + ABZR87_RS02125 0.76 -0.8 457,054 - ABZR87_RS02125 0.77 -0.2 457,054 - ABZR87_RS02125 0.77 +0.5 457,065 + ABZR87_RS02125 0.79 -1.4 457,065 + ABZR87_RS02125 0.79 +0.1 457,066 - ABZR87_RS02125 0.80 -0.2 457,102 - ABZR87_RS02125 0.89 -2.4 457,102 - ABZR87_RS02125 0.89 +0.1 457,131 + -2.1 457,132 - +1.9 457,132 - -1.9 457,154 + +0.7 457,154 + +0.8 457,154 + -0.5 457,154 + +0.8 457,155 - +0.4 457,155 - -1.2 457,155 - +0.2 457,155 - -0.4 457,227 + +4.0 457,227 + +0.7 457,227 + +0.3 457,227 + -0.9 457,228 - -0.0 457,228 - +2.0 457,228 - +0.4 458,153 + ABZR87_RS02135 0.21 +0.1 458,153 + ABZR87_RS02135 0.21 -0.5 458,153 + ABZR87_RS02135 0.21 -1.7 458,153 + ABZR87_RS02135 0.21 -0.6 458,153 + ABZR87_RS02135 0.21 +0.8 458,154 - ABZR87_RS02135 0.22 +2.4 458,154 - ABZR87_RS02135 0.22 +0.9 458,154 - ABZR87_RS02135 0.22 -0.4 458,154 - ABZR87_RS02135 0.22 +0.2 458,154 - ABZR87_RS02135 0.22 +0.9 458,154 - ABZR87_RS02135 0.22 -1.9 458,252 + ABZR87_RS02135 0.35 +1.4 458,252 + ABZR87_RS02135 0.35 +0.2 458,252 + ABZR87_RS02135 0.35 -0.3 458,253 - ABZR87_RS02135 0.35 +0.7 458,253 - ABZR87_RS02135 0.35 -1.7 458,253 - ABZR87_RS02135 0.35 +0.1 458,253 - ABZR87_RS02135 0.35 -1.3 458,264 + ABZR87_RS02135 0.37 +1.5 458,264 + ABZR87_RS02135 0.37 -0.4 458,264 + ABZR87_RS02135 0.37 +0.7 458,264 + ABZR87_RS02135 0.37 +0.2 458,264 + ABZR87_RS02135 0.37 +0.8 458,264 + ABZR87_RS02135 0.37 -0.2 458,264 + ABZR87_RS02135 0.37 -0.3 458,264 + ABZR87_RS02135 0.37 +0.6 458,265 - ABZR87_RS02135 0.37 +1.2 458,265 - ABZR87_RS02135 0.37 -0.4 458,285 + ABZR87_RS02135 0.40 +1.0 458,285 + ABZR87_RS02135 0.40 -0.5 458,285 + ABZR87_RS02135 0.40 +0.8 458,285 + ABZR87_RS02135 0.40 +0.4 458,285 + ABZR87_RS02135 0.40 -0.5 458,286 - ABZR87_RS02135 0.40 +1.0 458,286 - ABZR87_RS02135 0.40 +0.6 458,286 - ABZR87_RS02135 0.40 -1.7 458,289 + ABZR87_RS02135 0.40 -0.7 458,289 + ABZR87_RS02135 0.40 -1.4 458,289 + ABZR87_RS02135 0.40 -0.3 458,289 + ABZR87_RS02135 0.40 -0.4 458,289 + ABZR87_RS02135 0.40 +1.5 458,289 + ABZR87_RS02135 0.40 +1.5 458,289 + ABZR87_RS02135 0.40 -0.5 458,289 + ABZR87_RS02135 0.40 +1.0 458,289 + ABZR87_RS02135 0.40 -1.6 458,289 + ABZR87_RS02135 0.40 +0.4 458,289 + ABZR87_RS02135 0.40 -1.3 458,290 - ABZR87_RS02135 0.40 -1.2 458,290 - ABZR87_RS02135 0.40 +1.6 458,290 - ABZR87_RS02135 0.40 -0.0 458,290 - ABZR87_RS02135 0.40 +0.6 458,290 - ABZR87_RS02135 0.40 -1.0 458,290 - ABZR87_RS02135 0.40 -0.0 458,290 - ABZR87_RS02135 0.40 -2.3 458,290 - ABZR87_RS02135 0.40 +0.4 458,290 - ABZR87_RS02135 0.40 -1.8 458,290 - ABZR87_RS02135 0.40 -0.4 458,290 - ABZR87_RS02135 0.40 +0.2 458,297 + ABZR87_RS02135 0.41 -1.4 458,297 + ABZR87_RS02135 0.41 +0.1 458,298 - ABZR87_RS02135 0.41 -0.5 458,298 - ABZR87_RS02135 0.41 -1.2 458,433 - ABZR87_RS02135 0.60 +0.2 458,472 - ABZR87_RS02135 0.65 +0.5 458,594 + ABZR87_RS02135 0.82 +0.1 458,594 + ABZR87_RS02135 0.82 +0.8 458,595 - ABZR87_RS02135 0.82 -0.0 458,595 - ABZR87_RS02135 0.82 +1.1 458,600 + ABZR87_RS02135 0.83 +0.1 458,601 - ABZR87_RS02135 0.83 +0.5 458,617 + ABZR87_RS02135 0.85 +1.1 458,617 + ABZR87_RS02135 0.85 +1.4 458,618 - ABZR87_RS02135 0.85 +4.0 458,618 - ABZR87_RS02135 0.85 +0.7 458,618 - ABZR87_RS02135 0.85 -2.8 458,618 - ABZR87_RS02135 0.85 +0.2 458,618 - ABZR87_RS02135 0.85 -0.5 458,618 - ABZR87_RS02135 0.85 -0.6 458,618 - ABZR87_RS02135 0.85 -0.4 458,618 - ABZR87_RS02135 0.85 -1.1 458,619 + ABZR87_RS02135 0.85 +0.5 458,619 + ABZR87_RS02135 0.85 +0.7 458,619 + ABZR87_RS02135 0.85 +0.2 458,620 - ABZR87_RS02135 0.85 +0.5 458,620 - ABZR87_RS02135 0.85 -1.1 458,620 - ABZR87_RS02135 0.85 -1.1 458,620 - ABZR87_RS02135 0.85 -0.4 458,641 + ABZR87_RS02135 0.88 -0.1 458,641 + ABZR87_RS02135 0.88 +0.5 458,641 + ABZR87_RS02135 0.88 -1.2 458,641 + ABZR87_RS02135 0.88 -0.4 458,641 + ABZR87_RS02135 0.88 +1.3 458,641 + ABZR87_RS02135 0.88 +0.2 458,641 + ABZR87_RS02135 0.88 -0.7 458,641 + ABZR87_RS02135 0.88 +2.5 458,641 + ABZR87_RS02135 0.88 +2.4 458,641 + ABZR87_RS02135 0.88 -0.4 458,641 + ABZR87_RS02135 0.88 -2.6 458,642 - ABZR87_RS02135 0.88 +0.5 458,642 - ABZR87_RS02135 0.88 -2.6 458,642 - ABZR87_RS02135 0.88 -0.2 458,642 - ABZR87_RS02135 0.88 -1.9 458,642 - ABZR87_RS02135 0.88 -0.7 458,642 - ABZR87_RS02135 0.88 -0.5 458,642 - ABZR87_RS02135 0.88 +1.1 458,642 - ABZR87_RS02135 0.88 -0.3 458,643 + ABZR87_RS02135 0.89 +0.4 458,644 - ABZR87_RS02135 0.89 -1.6 458,644 - ABZR87_RS02135 0.89 +0.2 458,644 - ABZR87_RS02135 0.89 -0.6 458,817 - -0.4 458,990 + -0.8 458,990 + +0.1 458,991 - +0.1 458,991 - -0.4
Or see this region's nucleotide sequence