Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01480 and ABZR87_RS01485 are separated by 132 nucleotides ABZR87_RS01485 and ABZR87_RS01490 are separated by 173 nucleotides
ABZR87_RS01480: ABZR87_RS01480 - arabinose ABC transporter substrate-binding protein, at 311,370 to 312,317
_RS01480
ABZR87_RS01485: ABZR87_RS01485 - 2-dehydro-3-deoxygalactonokinase, at 312,450 to 313,463
_RS01485
ABZR87_RS01490: ABZR87_RS01490 - porin, at 313,637 to 314,713
_RS01490
Position (kb) 312
313
314 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.477 kb on - strand, within ABZR87_RS01480 at 311.477 kb on - strand, within ABZR87_RS01480 at 311.556 kb on - strand, within ABZR87_RS01480 at 311.857 kb on + strand, within ABZR87_RS01480 at 311.857 kb on + strand, within ABZR87_RS01480 at 311.858 kb on - strand, within ABZR87_RS01480 at 312.452 kb on - strand at 312.733 kb on + strand, within ABZR87_RS01485 at 312.733 kb on + strand, within ABZR87_RS01485 at 312.733 kb on + strand, within ABZR87_RS01485 at 312.734 kb on - strand, within ABZR87_RS01485 at 312.734 kb on - strand, within ABZR87_RS01485 at 312.734 kb on - strand, within ABZR87_RS01485 at 312.734 kb on - strand, within ABZR87_RS01485 at 313.437 kb on - strand at 313.505 kb on - strand at 313.639 kb on - strand at 313.661 kb on - strand at 313.663 kb on - strand at 313.663 kb on - strand at 313.663 kb on - strand at 313.663 kb on - strand at 313.762 kb on - strand, within ABZR87_RS01490 at 313.965 kb on - strand, within ABZR87_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 311,476 + ABZR87_RS01480 0.11 -1.9 311,476 + ABZR87_RS01480 0.11 +3.9 311,476 + ABZR87_RS01480 0.11 +4.2 311,476 + ABZR87_RS01480 0.11 +1.4 311,476 + ABZR87_RS01480 0.11 +0.2 311,476 + ABZR87_RS01480 0.11 +3.0 311,476 + ABZR87_RS01480 0.11 +2.1 311,477 - ABZR87_RS01480 0.11 +0.4 311,477 - ABZR87_RS01480 0.11 +0.3 311,556 - ABZR87_RS01480 0.20 -0.1 311,857 + ABZR87_RS01480 0.51 +0.5 311,857 + ABZR87_RS01480 0.51 -0.2 311,858 - ABZR87_RS01480 0.51 +0.4 312,452 - -0.2 312,733 + ABZR87_RS01485 0.28 -1.6 312,733 + ABZR87_RS01485 0.28 +0.2 312,733 + ABZR87_RS01485 0.28 -2.5 312,734 - ABZR87_RS01485 0.28 -0.0 312,734 - ABZR87_RS01485 0.28 -0.2 312,734 - ABZR87_RS01485 0.28 -2.0 312,734 - ABZR87_RS01485 0.28 -2.4 313,437 - -2.0 313,505 - +0.4 313,639 - +0.8 313,661 - -1.2 313,663 - -0.0 313,663 - -0.6 313,663 - -0.2 313,663 - -0.2 313,762 - ABZR87_RS01490 0.12 +0.9 313,965 - ABZR87_RS01490 0.30 +0.9
Or see this region's nucleotide sequence