Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01445 and ABZR87_RS01450 are separated by 20 nucleotides ABZR87_RS01450 and ABZR87_RS01455 overlap by 4 nucleotides ABZR87_RS01455 and ABZR87_RS01460 overlap by 4 nucleotides ABZR87_RS01460 and ABZR87_RS01465 overlap by 20 nucleotides
ABZR87_RS01445: ABZR87_RS01445 - galactonate dehydratase, at 304,406 to 305,554
_RS01445
ABZR87_RS01450: ABZR87_RS01450 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 305,575 to 306,201
_RS01450
ABZR87_RS01455: ABZR87_RS01455 - SDR family oxidoreductase, at 306,198 to 307,004
_RS01455
ABZR87_RS01460: ABZR87_RS01460 - aldose 1-epimerase, at 307,001 to 307,885
_RS01460
ABZR87_RS01465: ABZR87_RS01465 - SMP-30/gluconolactonase/LRE family protein, at 307,866 to 308,780
_RS01465
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.248 kb on - strand, within ABZR87_RS01445 at 305.338 kb on - strand, within ABZR87_RS01445 at 305.352 kb on + strand, within ABZR87_RS01445 at 305.352 kb on + strand, within ABZR87_RS01445 at 305.353 kb on - strand, within ABZR87_RS01445 at 305.353 kb on - strand, within ABZR87_RS01445 at 305.353 kb on - strand, within ABZR87_RS01445 at 305.353 kb on - strand, within ABZR87_RS01445 at 305.403 kb on + strand, within ABZR87_RS01445 at 305.404 kb on - strand, within ABZR87_RS01445 at 305.404 kb on - strand, within ABZR87_RS01445 at 305.529 kb on + strand at 305.529 kb on + strand at 305.529 kb on + strand at 305.530 kb on - strand at 305.530 kb on - strand at 305.603 kb on + strand at 305.664 kb on - strand, within ABZR87_RS01450 at 305.664 kb on - strand, within ABZR87_RS01450 at 305.709 kb on - strand, within ABZR87_RS01450 at 305.793 kb on - strand, within ABZR87_RS01450 at 306.209 kb on - strand at 306.293 kb on - strand, within ABZR87_RS01455 at 306.293 kb on - strand, within ABZR87_RS01455 at 306.454 kb on + strand, within ABZR87_RS01455 at 306.455 kb on - strand, within ABZR87_RS01455 at 306.457 kb on + strand, within ABZR87_RS01455 at 307.032 kb on + strand at 307.033 kb on - strand at 307.164 kb on + strand, within ABZR87_RS01460 at 307.164 kb on + strand, within ABZR87_RS01460 at 307.164 kb on + strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.174 kb on - strand, within ABZR87_RS01460 at 307.174 kb on - strand, within ABZR87_RS01460 at 307.174 kb on - strand, within ABZR87_RS01460 at 307.460 kb on + strand, within ABZR87_RS01460 at 307.500 kb on + strand, within ABZR87_RS01460 at 307.500 kb on + strand, within ABZR87_RS01460 at 307.501 kb on - strand, within ABZR87_RS01460 at 307.624 kb on - strand, within ABZR87_RS01460 at 307.624 kb on - strand, within ABZR87_RS01460 at 307.841 kb on + strand at 307.841 kb on + strand at 307.842 kb on - strand at 307.842 kb on - strand at 307.853 kb on + strand at 307.879 kb on + strand at 307.879 kb on + strand at 307.879 kb on + strand at 307.879 kb on + strand at 307.879 kb on + strand at 307.879 kb on + strand at 307.879 kb on + strand at 307.879 kb on + strand at 307.880 kb on - strand at 307.880 kb on - strand at 307.880 kb on - strand at 307.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 305,205 + ABZR87_RS01445 0.70 -0.8 305,205 + ABZR87_RS01445 0.70 -0.5 305,205 + ABZR87_RS01445 0.70 +1.0 305,205 + ABZR87_RS01445 0.70 +0.7 305,206 - ABZR87_RS01445 0.70 -0.2 305,206 - ABZR87_RS01445 0.70 +0.8 305,206 - ABZR87_RS01445 0.70 +0.2 305,248 - ABZR87_RS01445 0.73 -0.3 305,338 - ABZR87_RS01445 0.81 +0.2 305,352 + ABZR87_RS01445 0.82 -0.6 305,352 + ABZR87_RS01445 0.82 +0.9 305,353 - ABZR87_RS01445 0.82 -0.7 305,353 - ABZR87_RS01445 0.82 +0.0 305,353 - ABZR87_RS01445 0.82 -3.4 305,353 - ABZR87_RS01445 0.82 -0.1 305,403 + ABZR87_RS01445 0.87 +0.5 305,404 - ABZR87_RS01445 0.87 -0.8 305,404 - ABZR87_RS01445 0.87 -1.2 305,529 + -1.4 305,529 + +0.0 305,529 + -0.3 305,530 - -0.1 305,530 - +0.6 305,603 + +0.6 305,664 - ABZR87_RS01450 0.14 -2.9 305,664 - ABZR87_RS01450 0.14 -2.1 305,709 - ABZR87_RS01450 0.21 -1.2 305,793 - ABZR87_RS01450 0.35 -0.8 306,209 - +0.5 306,293 - ABZR87_RS01455 0.12 +0.1 306,293 - ABZR87_RS01455 0.12 -0.3 306,454 + ABZR87_RS01455 0.32 +0.7 306,455 - ABZR87_RS01455 0.32 +0.4 306,457 + ABZR87_RS01455 0.32 +0.7 307,032 + +0.8 307,033 - -0.5 307,164 + ABZR87_RS01460 0.18 -0.3 307,164 + ABZR87_RS01460 0.18 -0.3 307,164 + ABZR87_RS01460 0.18 -1.2 307,165 - ABZR87_RS01460 0.19 -1.2 307,165 - ABZR87_RS01460 0.19 -1.3 307,165 - ABZR87_RS01460 0.19 -0.3 307,165 - ABZR87_RS01460 0.19 +0.5 307,165 - ABZR87_RS01460 0.19 -0.2 307,174 - ABZR87_RS01460 0.20 -0.0 307,174 - ABZR87_RS01460 0.20 +0.4 307,174 - ABZR87_RS01460 0.20 +2.2 307,460 + ABZR87_RS01460 0.52 -0.7 307,500 + ABZR87_RS01460 0.56 +1.2 307,500 + ABZR87_RS01460 0.56 -0.2 307,501 - ABZR87_RS01460 0.56 +1.1 307,624 - ABZR87_RS01460 0.70 +1.9 307,624 - ABZR87_RS01460 0.70 -0.7 307,841 + -0.6 307,841 + +0.1 307,842 - -0.9 307,842 - +0.9 307,853 + +0.7 307,879 + -1.1 307,879 + -1.0 307,879 + -0.3 307,879 + -0.2 307,879 + -1.2 307,879 + -1.3 307,879 + -0.6 307,879 + +1.9 307,880 - +4.9 307,880 - +0.6 307,880 - +1.7 307,914 + -0.8
Or see this region's nucleotide sequence